Candidate motifs - PowerPoint PPT Presentation

ChIP-seq

ChIP-seq. Xiaole Shirley Liu STAT115, STAT215. Outline. ChIP-chip on yeast Technology and data analysis : MDscan motif finding, regulatory network ChIP-X on human Tiling microarrays and peak finding High throughput sequencing and peak finding Data analysis and examples

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716 views • 42 slides

Database integration

Observed fragment length distributions. Raw ChIP experiments. PBM TF affinity. Positional Priors, Binding Events , Candidate Motifs. Database integration. Generative model of binding data and sequence. Comparative Genomics. Known motif databases. DNase hyper sensitivity.

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128 views • 1 slides

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