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Multiple Alignment

Multiple Alignment. Outline. Dynamic Programming in 3-D Progressive Alignment Profile Progressive Alignment (ClustalW) Scoring Multiple Alignments Entropy Sum of Pairs Alignment Partial Order Alignment (POA) A-Bruijin (ABA) Approach to Multiple Alignment.

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1.31k views • 64 slides

Scoring a multiple alignment

Scoring a multiple alignment. A. A. A. A. C. A. C. A. C. A. C. C. A. C. A. Sum of pairs. Star. Tree. A. AAA AAA AAA AA C A CC. A. C. A. A. A. A. A. A. A. C. 10 ?. + (6 ? - 4 ? ). + (4 ? - 6 ? ). A. A. A. C. Sum of Pairs. = 20 ? - 10 ?.

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Common subsequence score - PowerPoint PPT Presentation

Multiple Alignment

Scoring a multiple alignment