'Exact string matching' diaporamas de présentation

Exact String Matching, Suffix Trees, and Applications

Exact String Matching, Suffix Trees, and Applications. CAP 5937 Bioinformatics University of Central Florida Fall 2004. Problem.

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Bioinformatic PhD. course

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796 views • 79 slides

678 views • 57 slides

String Matching with k Mismatches

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Applications of Suffix Trees

Applications of Suffix Trees. Charles Yan 2008. 1. Exact String Matching. |P|=n, |T|=m P and T are both known at the same time Boyer-Moore, or Suffix trees. O(n+m) T is known and kept fixed. P varies. Suffix trees, O(m) in preprocess, O(n+k) in searching

614 views • 40 slides

Variations of Forward-SBNDM

Variations of Forward-SBNDM. Hannu Peltola Jorma Tarhio Aalto University Finland. Aims. Tuning algorithms for exact string matching. Studying the effect of simultaneous 2-byte read. SBNDM Simple Backward Nondeterministic DAWG Matching.

415 views • 28 slides

Mathematics and computation behind BLAST and FASTA

Mathematics and computation behind BLAST and FASTA. Xuhua Xia xxia@uottawa.ca http://dambe.bio.uottawa.ca. Bioinformatics-enabled research. Sequence variation: UU C U C AA CC AA CC A U AAA G A U A U UU C U C U A C AAA CC A C AAA G A C A U UU C U C AA CC AA CC A U AAA G A U A U

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Genome

Genome. Nucleus. Tissue. Cell. The chromosomes contains the set of instructions for alive beings. The chromosomes are the volumes of an encyclopedia called Genome. Chromosome. >human chromosome

242 views • 23 slides