Fastqc - PowerPoint PPT Presentation

Hands-on Tutorial: RNA- seq Analysis using Cluster Computing

Hands-on Tutorial: RNA- seq Analysis using Cluster Computing. NYU Center for Health Informatics and Bioinformatics. Intro to RNA- seq Quick review of ssh login to HPC cluster 10 essential Linux commands HPC Environment Modules Sun Grid Engine commands for batch jobs

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595 views • 38 slides

Day 4: QC and Trimming

Day 4: QC and Trimming. Itinerary:. View your “generated” FASTQ Files Determine the quality of our sequences Remove poor quality or unaffiliated reads Confirm that the libraries are of high enough quality for mapping. FASTQ example on terminal.

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458 views • 20 slides

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