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Sequence comparison and Phylogeny

Sequence comparison and Phylogeny

Sequence comparison and Phylogeny. based on Chapter 4 Lesk, Introduction to Bioinformatics. Contents. Motivation Sequence comparison and alignments Dot plots Dynamic programming Substitution matrices Dynamic programming: Local and global alignments and gaps BLAST

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1.65k views • 148 slides
Module A: Fundamental Algorithms in Sequence Analysis

Module A: Fundamental Algorithms in Sequence Analysis

Module A: Fundamental Algorithms in Sequence Analysis. Section 1: Sequence Alignments Srinivas Aluru. Biology easily has 500 years of exciting problems to work on -Donald E. Knuth. Biological Data. DNA: Self-replicating

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652 views • 46 slides
DESIGN OF LARGE OPENINGS IN UNBONDED POST-TENSIONED PRECAST CONCRETE WALLS

DESIGN OF LARGE OPENINGS IN UNBONDED POST-TENSIONED PRECAST CONCRETE WALLS

DESIGN OF LARGE OPENINGS IN UNBONDED POST-TENSIONED PRECAST CONCRETE WALLS. Michael G. Allen Yahya C. Kurama University of Notre Dame Notre Dame, IN. PCI Committee Days, Chicago, Illinois, April 14-15, 2000. 1998 PCI Daniel P. Jenny Research Fellowship University of Notre Dame. ELEVATION.

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504 views • 41 slides
Sequence similarity

Sequence similarity

Sequence similarity. Sequence Comparison. Much of bioinformatics involves sequences DNA sequences RNA sequences Protein sequences We can think of these sequences as strings of letters DNA & RNA: alphabet of 4 letters Protein: alphabet of 20 letters. Sequence Comparison - Motivation.

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398 views • 32 slides
The Influence of Planets on Disk Observations (and the influence of disks on planet observations)

The Influence of Planets on Disk Observations (and the influence of disks on planet observations)

The Influence of Planets on Disk Observations (and the influence of disks on planet observations). Geoff Bryden (JPL) Doug Lin (UCSC) Hal Yorke (JPL). What kind of disk features should we expect?. Planetary Gaps Spiral Waves. Accretional Hot Spots Shadowed Regions.

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350 views • 22 slides
Sources Page & Holmes

Sources Page & Holmes

Sources Page & Holmes Vladimir Likic presentation: http ://science.marshall.edu/murraye/Clearer%20Matrix%20slide% 20show.pdf Wikipedia Lecture at : http:// cs.njit.edu / usman /courses/bnfo601_fall08/ AffineGap.pdf.

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280 views • 21 slides
Comparison of experimental and simulation distortions of quenched C-ring test parts

Comparison of experimental and simulation distortions of quenched C-ring test parts

12 th ESAFORM 2008 conference on material forming. Enschede, The Netherlands 27, 28 and 29 april 2009. Comparison of experimental and simulation distortions of quenched C-ring test parts. C. NICOLAS, Ph.D. Student C. BAUDOUIN, Assistant-professor R. BIGOT, Professor

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319 views • 20 slides

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