Gene features - PowerPoint PPT Presentation

Genome Sequencing and Annotation (Part 1)

Genome Sequencing and Annotation (Part 1). Objective of most genome projects Sequencing – DNA, mRNA Identify genes characterize gene features This chapter How blocks of DNA seqs. are obtained How these blocks are assembled into contigs then genomes

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1.02k views • 46 slides

CSE182-L12

CSE182-L12. Gene Finding. Silly Quiz. Who are these people, and what is the occasion?. ATG. 5’ UTR. 3’ UTR. exon. intron. Translation start. Acceptor. Donor splice site. Transcription start. Gene Features. ATG. 5’ UTR. 3’ UTR. exon. intron. Translation start. Acceptor.

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492 views • 36 slides

Sequences (FASTA)

Input main features (coordinates of exons/CDS in genes). Features in BED. Features in GTF/GFF3. GenBank Accession Number/GI. Sequences (FASTA). F etch corresponding information from GenBank. Map CDS to genomic sequence by est2genome. Coordinates for Exons/CDS. Coordinates for CDS.

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200 views • 1 slides

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