'Genomic sequences' diaporamas de présentation

Hands-on Experience for using the Human Oral Microbiome Database (HOMD)

Hands-on Experience for using the Human Oral Microbiome Database (HOMD). 2009 IADR Workshop, Miami, FL, USA Tsute (George) Chen The Forsyth Institute 140 Fenway, Boston, MA, USA. Outline. Introduction Available information and tools

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Gene Regulation and Microarrays

Gene Regulation and Microarrays. Finding Regulatory Motifs. Regulatory Motif Discovery. DNA. Find motifs within groups of corregulated genes . Common subsequence. Group of co-regulated genes. slide credits: M. Kellis. Characteristics of Regulatory Motifs. Tiny Highly Variable

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Genomic Repeat Visualisation Using Suffix Arrays

Genomic Repeat Visualisation Using Suffix Arrays. Nava Whiteford Department of Chemistry University of Southampton new@soton.ac.uk. Repeat Visualisation Using Suffix Arrays. The Analysis Artificial Sequences Genomic Sequences The Algorithm Larger Sequences Non-genomic sequences.

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Alignment of Genomic Sequences

Alignment of Genomic Sequences. Wen-Hsiung Li Ecology & Evolution Univ. of Chicago. Sequence Alignment. (1) pairs of matched bases (2) pairs of mismatched bases (3) pairs consisting of a base from one sequence and a gap (null base) from the other sequence.

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Biological Databases and Tools

Biological Databases and Tools. Sandra Sinisi / Kathryn Steiger November 25, 2002. Introduction. More than storage Qualities of a good database Flexible retrieval Analysis software compatible Data cleaning features. The need for electronic access.

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DAY 6: Sources of genetic variation

DAY 6: Sources of genetic variation. IMSS BIOLOGY ~ SUMMER 2011. LEARNING TARGETS. To understand sources of genetic variation, in particular Mutation Sex (and no sex) To understand patterns of inheritance, beyond the monohybrid crosses

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Antibiotic Resistance and Strategies to Develop New Antibiotics

Antibiotic Resistance and Strategies to Develop New Antibiotics. D. J. Kalita Associate Professor Department of Veterinary Biochemistry Faculty of Veterinary Science AAU , Khanapara , Guwahati-22. Introduction.

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Antibiotic Resistance and Strategies to Develop New Antibiotics

Antibiotic Resistance and Strategies to Develop New Antibiotics. D. J. Kalita Associate Professor Department of Veterinary Biochemistry Faculty of Veterinary Science AAU , Khanapara , Guwahati-22. Introduction.

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Rhesus genome annotations

Rhesus genome annotations. Rob Norgren Department of Genetics, Cell Biology and Anatomy University of Nebraska Medical Center. Conventional Approach to GeneChip Production. Sequence millions of ESTs Obtain finished genomic sequences Cluster redundant ESTs

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Finding Promoters other important genomic sequences

Finding Promoters other important genomic sequences. Lecture 10. Introduction. Purpose of Promoter analysis Finding Prokaryotic promoters Finding Eukaryotic promoters Two basic approaches to finding promoters and other regulatory elements

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Figure S1. Alignment of sequences from the 5?-end to the Sm binding site of

Figure S1. Alignment of sequences from the 5?-end to the Sm binding site of reported genomic sequences ( 9-15 ) for HSUR 1. MicroRNA binding sites are boxed in blue, the ARE is boxed in red, and Sm binding sites are boxed in grey. Perfectly conserved nucleotides are bold.

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MC-Search : a three-dimensional RNA pattern matching tool

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Paul Bain Reference and Education Services Librarian Countway Library of Medicine

Genome Browsers. Paul Bain Reference and Education Services Librarian Countway Library of Medicine pbain@hms.harvard.edu 617-432-3236 Countway Reference and Education Services 617-432-2134. Genome Browsers. Genetic and molecular data organized and coordinated with whole genomic sequences

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Graphic : Nearest Neighbor Search for Distance Based Indexing

Grant Number: IIS-020914 5 Institution of PI: Case Western Reserve University PIs: Z. Meral Ozsoyoglu, Cenk Sahinalp, Piotr Indyk Title: Improving Proximity Search for Sequences. Significant Results:.

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