'Lcs length' diaporamas de présentation

Design and Analysis of Algorithms

Design and Analysis of Algorithms. Dynamic Programming & Greedy Algorithms. Review: Dynamic Programming. Dynamic programming is a strategy for designing algorithms Use when problem breaks down into recurring small subproblems. Dynamic Programming Example: Longest Common Subsequence.

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ITCS 6114 Dynamic programming Longest Common Subsequence

ITCS 6114 Dynamic programming Longest Common Subsequence. Dynamic programming. It is used, when the solution can be recursively described in terms of solutions to subproblems ( optimal substructure ) Algorithm finds solutions to subproblems and stores them in memory for later use

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CS 332 - Algorithms Dynamic programming Longest Common Subsequence

CS 332 - Algorithms Dynamic programming Longest Common Subsequence. Dynamic programming. It is used, when the solution can be recursively described in terms of solutions to subproblems ( optimal substructure ) Algorithm finds solutions to subproblems and stores them in memory for later use

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Dynamic programming Longest Common Subsequence

Dynamic programming Longest Common Subsequence. Longest Common Subsequence (LCS). Application: comparison of two DNA strings Ex: X= {A B C B D A B }, Y= {B D C A B A} Longest Common Subsequence: X = A B C B D A B Y = B D C A B A

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This Unit

This Unit. Longest common subsequence Edit distance. Biological Applications. Compare the DNA of two or more organisms How similar are the two strands? Is one a substring of the other?

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Longest Common Subsequence (LCS)

Longest Common Subsequence (LCS). Problem : Given sequences x[1..m] and y[1..n], find a longest common subsequence of both. Example : x=ABC BDAB and y= BD C AB A, BCA is a common subsequence and BCBA and BDAB are two LCSs. LCS. Brute force solution Writing a recurrence equation

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L ongest C ommon S ubsequence

L ongest C ommon S ubsequence T.H. Cormen et al., Introduction to Algorithms , MIT press, 3/e, 2009, pp. 390-396 Example : X =abadcda, Y =acbacadb bcd is a common subsequence of X , Y X =a b ad cd a , Y =ac b a c a d b abacd is an LCS of X , Y (not unique)

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Chapter 15: Dynamic Programming

Chapter 15: Dynamic Programming. Matrix-chain multiplication. Compute the product of n matrices A1,A2,..,An Where to put the parentheses (A1( A2 (A3 A4))) (A1(( A2 A3) A4)) ((A1 A2) (A3 A4)) ((A1 (A2 A3)) A4) (((A1 A2) A3) A4) P(n) - How many parenthesizations ? 1 if n=1

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