'Lignment' diaporamas de présentation

Bioinformatics

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T he A lignment F actor tm

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LU, 2014, Juris V ?ksna

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CS 5263 Bioinformatics

CS 5263 Bioinformatics. Lecture 7: Heuristic Sequence Alignment Tools (BLAST) Multiple Sequence Alignment. Roadmap. Last lecture review Sequence alignment statistics Today Heuristic alignment algorithms B asic L ocal A lignment S earch T ools Multiple sequence alignment algorithms.

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Alignment principles and homology searching using (PSI-)BLAST Jaap Heringa

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From Pairwise to Multiple Alignment

From Pairwise to Multiple Alignment. WHATS TODAY?. Multiple Sequence Alignment- CLUSTAL MOTIF search. M ultiple S equence A lignment MSA. VTIS C TGSSSNIGAG-NHVK W YQQLPG VTIS C TGTSSNIGS--ITVN W YQQLPG LRLS C SSSGFIFSS--YAMY W VRQAPG LSLT C TVSGTSFDD--YYST W VRQPPG

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Multiple sequence alignment (MSA)

Multiple sequence alignment (MSA). Bioe C144/244 Fall 2010. Topics Covered. Uses of multiple sequence alignments (MSAs) Global, glocal and local alignments Structural vs sequence alignments Progressive, iterative and master-slave alignment methods ClustalW, MAFFT

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Fasta, Blast, Probabilities

Fasta, Blast, Probabilities. Reminder. Last classes we discussed dynamic programming algorithms for global alignment local alignment Multiple alignment All of these assumed a scoring rule: that determines the quality of perfect matches, substitutions, insertions, and deletions.

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Sequence alignment

Sequence alignment. Sushmita Roy BMI/CS 576 www.biostat.wisc.edu/bmi576/ Sushmita Roy sroy@biostat.wisc.edu Sep 18 th , 2012. BMI/CS 576. Outline of this segment. Pairwise Sequence alignment Local and global alignments Gap penalities Heuristic algorithms Multiple sequence alignment

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Pairwise Sequence Alignment Part 2

Pairwise Sequence Alignment Part 2. Outline. Global alignments-continuation Local versus Global BLAST algorithms Evaluating significance of alignments. Global Alignment -Cont. Needleman-Wunsch Alignment. Global alignment between sequences Compare entire sequence against another

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Sequence Alignment

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CSCE555 Bioinformatics

CSCE555 Bioinformatics. Lecture 6 Sequence Alignment (partIII) Meeting: MW 4:00PM-5:15PM SWGN2A21 Instructor: Dr. Jianjun Hu Course page: http://www.scigen.org/csce555. University of South Carolina Department of Computer Science and Engineering 2008 www.cse.sc.edu. Roadmap.

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CECS 694-04 Bioinformatics Journal Club Eric Rouchka, D.Sc. September 10, 2003

SATCHMO: sequence alignment and tree construction using hidden Markov models Edgar, R.C. and Sjolander, K. Bioinformatics . 19 (11):1404-1411. CECS 694-04 Bioinformatics Journal Club Eric Rouchka, D.Sc. September 10, 2003. What is Multiple Sequence Alignment (MSA) ?.

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CISC 667 Intro to Bioinformatics (Spring 2007) Sequence pairwise alignment

CISC 667 Intro to Bioinformatics (Spring 2007) Sequence pairwise alignment. Score statistics: E-value and p-value Heuristic algorithms : BLAST and FASTA Database search : gene finding and annotations. Significance of scores Goals for sequence alignments: (1) whether and

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CS 6990 Bioinformatics BLAST

CS 6990 Bioinformatics BLAST. Fall 2004 Dr. Susan Bridges. Overview. B asic L ocal A lignment T ool BLAST is a collection of programs Developed by Altschul, et al. Simplification of the Smith Waterman Dynamic Programming algorithm

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The Auto a lignment S ystem of GEO 600

The Auto a lignment S ystem of GEO 600. Hartmut Grote and the GEO 600 team Max-Planck Institute for Gravitational Physics Amaldi , Perth 12-07-2001. Autoalignment - P urposes. Superimpose cavity axes with incoming bea m - Differential wavefront sensing (analog feedback for 14 DOF)

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Aligning Advanced Detectors

Aligning Advanced Detectors. L. Barsotti, M. Evans, P. Fritschel LIGO/MIT. Understanding Detector Performance and Ground-Based Detector Designs. LIGO-G0900604. 8 th Amaldi Conference. June 09 - Columbia University, NYC. Radiation pressure effects included. Optickle.

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Four individuals

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