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Psi-Blast

Psi-Blast

Psi-Blast. Morten Nielsen, CBS, Department of Systems Biology, DTU. Objectives. Understand why BLAST often fails for low sequence similarity See the beauty of sequence profiles Position specific scoring matrices (PSSMs) Use BLAST to generate Sequence profiles

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1.06k views • 77 slides
Inferring Protein Structure with Discriminative Learning and Network Diffusion

Inferring Protein Structure with Discriminative Learning and Network Diffusion

Inferring Protein Structure with Discriminative Learning and Network Diffusion. Rui Kuang Department of Computer Science Center for Computational Learning Systems Columbia University Thesis defense, August 16 th 2006. Agenda. Biological Background

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744 views • 62 slides
Inferring Protein Structure with Discriminative Learning and Network Diffusion

Inferring Protein Structure with Discriminative Learning and Network Diffusion

Inferring Protein Structure with Discriminative Learning and Network Diffusion. Rui Kuang Department of Computer Science Center for Computational Learning Systems Columbia University Thesis defense, August 16 th 2006. Agenda. Biological Background

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755 views • 62 slides
Katia Koelle Sarah Cobey Bryan Grenfell Mercedes Pascual

Katia Koelle Sarah Cobey Bryan Grenfell Mercedes Pascual

Epochal evolution shapes the phylodynamics of interpandemic influenza (H3N2). Katia Koelle Sarah Cobey Bryan Grenfell Mercedes Pascual. ?. SI87. VI75. ?. BK79. EN72. TX77. HK68. DIMACS, 9-10 October 2006. Pathogen diversity and cross-immunity. s.

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572 views • 35 slides
CRISPR-associated Proteins

CRISPR-associated Proteins

CRISPR-associated Proteins . Sarah Pyfrom sapyfrom@davidson.edu. Research Questions. What Cas-proteins does our species share with the 10 other species we chose to study? If so, how do they compare? How do Cas-proteins function in relation to CRISPR units? [Edit]:

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1.08k views • 22 slides
Amino Acids and Protein Structure

Amino Acids and Protein Structure

Amino Acids and Protein Structure. Protein structure. Four levels of protein structure Linear Sub-Structure 3D Structure Complex Structure. polarity. Hydrogen Bonding Intermolecular Forces Dipole- Dipole Ion-Dipole Van der Waals. Hydrophobic Effect.

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416 views • 21 slides

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