'Match 1' diaporamas de présentation

Sequence comparison and Phylogeny

Sequence comparison and Phylogeny. based on Chapter 4 Lesk, Introduction to Bioinformatics. Contents. Motivation Sequence comparison and alignments Dot plots Dynamic programming Substitution matrices Dynamic programming: Local and global alignments and gaps BLAST

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Local and Global Alignment, Database Searching With Blast

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Local Alignment

Tutorial 2. Local Alignment. Local alignment. When to use local alignment? How to solve a local alignment matrix Comparison to global alignment Cool story of the day. When to use local alignment?. When the aim is to find short similarities inside a sequence.

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Introduction to Perl

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Computing in Molecular Biology

Computing in Molecular Biology. Hugues Sicotte National Center for Biotechnology Information sicotte@ncbi.nlm.nih.gov. Alignment methods. Sequence Alignment representation using a dot plot. For a query of N letters against a subject sequence of M letters, it requires MxN comparisons.

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Sequence Alignments and Database Searches

Introduction to Bioinformatics. Sequence Alignments and Database Searches. Genes encode the recipes for proteins. Proteins: Molecular Machines. Proteins in your muscles allows you to move: myosin and actin. Proteins: Molecular Machines. Enzymes (digestion, catalysis) Structure (collagen).

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Sequence Alignment

Sequence Alignment. Sequence s. Much of bioinformatics involves sequences DNA sequences RNA sequences Protein sequences We can think of these sequences as strings of letters DNA & RNA: alphabet of 4 letters Protein: alphabet of 20 letters. Glycine (G, GLY) Alanine (A, ALA)

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A weighted Version of Free Energy Ribosomal Algorithm

A weighted Version of Free Energy Ribosomal Algorithm. Using MG1655 E.Coli Genome. S. E 1. E 2. C 1. E 3. C 2. E 4. C 3. Correlator. C 4. E L-N. C (L-N). Free Energy Ribosomal Algorithm.

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Hidden Markov Models

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Sequence alignment

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Global Sequence Alignment

Global Sequence Alignment. Fall 2003 Dr. Susan Bridges. Dynamic Programming Algorithm. Algorithm for finding optimal alignment in O(n 2 ) time and space. Based on an algorithm for text editing Uses alignment of prefixes to build up a global alignment Requires a method for scoring alignments.

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Multiple Sequence Alignment

Multiple Sequence Alignment. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. MSA. Multiple sequence alignment (MSA).

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Multiple Sequence Alignment

Multiple Sequence Alignment. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. MSA. Multiple sequence alignment (MSA).

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Coiste Na Og Loch Garman

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The Scanner Class and Formatting Output

The Scanner Class and Formatting Output. Mr. Lupoli. Items you need before beginning. From Website Scanner Class Quick Reference Ditto. Introduction. The scanner class is a STANDARDIZED class that uses different methods for READING in values from either the KEYBOARD or a FILE.

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125 Pounds

125 Pounds. Thomas Gowing (SWO). Thomas Gowing (SWO). BYE. Justin Purves (HCC) 13-9. Mat 1, 11am, Match # 11. BYE. Justin Purves (HCC). Mat 1 10am Match # 1. Justin Purves (HCC). Kyle McCrite (NIC) 4-2. Mat 1, 4:00, Match # 51. John Reese (CCC). CHAMPION. John Reese (CCC).

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HW #4: Due May 3rd th 23:59

HW #4: Due May 3rd th 23:59. Generate test cases that covers all possible execution paths of the triangle program through depth first search (DFS) traversal. Assume that initial test case is (1,1,1)

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Schedule Code ( FrA01.1 )

The i-match Project: A VR Based System to Allow Matching of an Optimum Interface to a User of Assistive Technology.

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