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NGS sequencing and Genome Assemblies from Animals and Large Plants

NGS sequencing and Genome Assemblies from Animals and Large Plants. Zemin Ning The Wellcome Trust Sanger Institute. Outline of the Talk:. NGS sequencing technologies Oxford Nanopore Assembly algorithms and Assemblers Phusion2 pipeline Tasmanian Devil genome project

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682 views • 47 slides

Large Plant Genome Assemblies using Phusion2

Large Plant Genome Assemblies using Phusion2. Zemin Ning The Wellcome Trust Sanger Institute. NGS Data. Assembly. Phusion2 Assembly Pipeline. Scaffolding Spinner. Mate Pair Reads 2k-40k. Pair End Reads 170-800bp. Consensus Bases Smalt & Gap5. Filtering Unikalow. Fermi.

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469 views • 27 slides

Zemin Ning The Wellcome Trust Sanger Institute

Assembly Scaffolding using String Graphs and In Silico Chromosome Assignment. Zemin Ning The Wellcome Trust Sanger Institute. Phusion2 Assembly Pipeline. Assembly. Illumina Reads. Supercontig. AGPcontig. Contigs. 2x75 or 2x100bp. Flow-sorting Reads Map Markers. Data Process.

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419 views • 25 slides

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Mate pair data - PowerPoint PPT Presentation

NGS sequencing and Genome Assemblies from Animals and Large Plants

Large Plant Genome Assemblies using Phusion2

Zemin Ning The Wellcome Trust Sanger Institute