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Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

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549 views • 44 slides
Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

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590 views • 44 slides
Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

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449 views • 44 slides
Using Combinatorial Optimization within Max-Product Belief Propagation

Using Combinatorial Optimization within Max-Product Belief Propagation

Using Combinatorial Optimization within Max-Product Belief Propagation. Danny Tarlow Toronto Machine Learning Group Oct 2, 2006. Based on work to be presented at NIPS 06 with John Duchi, Gal Elidan, and Daphne Koller. Motivation.

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525 views • 38 slides
Max-Sum Exact Inference

Max-Sum Exact Inference

Inference. Probabilistic Graphical Models. MAP. Max-Sum Exact Inference. Product ? Summation. E. A. B. C. D. Max-Sum Elimination in Chains. X. Factor Summation. Factor Maximization. E. A. B. C. D. Max-Sum Elimination in Chains. X. X. E. A. B. C. D.

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253 views • 17 slides

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