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Sequence analysis of nucleic acids and proteins: part 1

Sequence analysis of nucleic acids and proteins: part 1. Similarity search. Based on Chapter 3 of Post-genome Bioinformatics by Minoru Kanehisa, Oxford University Press, 2000. Search and learning problems in sequence analysis.

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609 views • 48 slides

CSCE555 Bioinformatics

CSCE555 Bioinformatics. Lecture 10 Motif Discovery Meeting: MW 4:00PM-5:15PM SWGN2A21 Instructor: Dr. Jianjun Hu Course page: http://www.scigen.org/csce555. HAPPY CHINESE NEW YEAR. University of South Carolina Department of Computer Science and Engineering 2008 www.cse.sc.edu. Outline.

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432 views • 35 slides

Repetitive Beta Folds

Repetitive Beta Folds. Form, Function, and Properties. Overview of Presentation. Introduction to traditional beta-helix fold Structural and functional properties Structure prediction by BetaWrap program Introduction to trimeric viral attachment fibers

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278 views • 16 slides

Practice (sort of...)

Practice (sort of...). http://weblogo.berkeley.edu/. Graphical representation of an amino acid or nucleic acid multiple sequence alignment developed by Tom Schneider and Mike Stephens. Exercise: Identify conserved motif in the 50 bases upstream of 350 E. coli genes . Results. MOTIF Search.

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221 views • 15 slides

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Motif search - PowerPoint PPT Presentation

Sequence analysis of nucleic acids and proteins: part 1

CSCE555 Bioinformatics

Repetitive Beta Folds

Practice (sort of...)