'Multiple sequence alignment' diaporamas de présentation

Molecular Phylogeny and Evolution

Molecular Phylogeny and Evolution. CISC 4020 Bioinformatics Spring 2012 Department of Computer and Information Science. Outline. Introduction to Evolution and Phylogeny Phylogenetic Tree Five stages of phylogenetic analysis. Evolution.

1.45k views • 75 slides

Introduction to Phylogenetic Systematics

Introduction to Phylogenetic Systematics. Mark Fishbein Dept. Biological Sciences Mississippi State University 13 October 2003. Which of these critters are most closely related?. alligator. gila monster. purple gallinule. ?. gopher tortoise. kingsnake. Phylogeny.

1.02k views • 62 slides

Pairwise and Multiple Sequence Alignment Lesson 2

Pairwise and Multiple Sequence Alignment Lesson 2. Motivation.

811 views • 59 slides

COT 6930 HPC and Bioinformatics Multiple Sequence Alignment

COT 6930 HPC and Bioinformatics Multiple Sequence Alignment. Xingquan Zhu Dept. of Computer Science and Engineering. Outline. Multiple Sequence Alignment What, Why, and How Multiple Sequence Alignment Methods Multidimensional dynamic programming Star Alignment Tree Alignment

888 views • 48 slides

950 views • 47 slides

Multiple sequence alignment

Multiple sequence alignment. Why we do multiple alignments?. Multiple nucleotide or amino sequence alignment techniques are usually performed to fit one of the following scopes :

1.14k views • 42 slides

An introduction to maximum parsimony and compatibility

An introduction to maximum parsimony and compatibility. Trevor Bruen PhD Candidate McGill Centre for Bioinformatics. Overview. The point of this talk is to give a sense how discrete mathematics enters into phylogenetic and genetic inference.

898 views • 40 slides

Homology modelling ?

772 views • 39 slides

Multiple Sequence Alignment (MSA)

Multiple Sequence Alignment (MSA). Multiple Alignment. Number of sequences >2 Global alignment Seek an alignment that maximizes score. Multiple Alignment.

385 views • 38 slides

TCS: A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree

TCS: A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction. http://www.tcoffee.org/Packages/Stable/Latest http :// tcoffee.crg.cat / tcs.

557 views • 38 slides

Sequence Alignment

Sequence Alignment. Motivation: Types. Two sequences of same length, some characters are different ( Database search) Aagtacggaga aagcaccgaga Two seq are of different length, possible gaps in one of them ( Database search) Aaccaccgaga Aa-caccgaga. Motivation: Types.

408 views • 25 slides

Sequence Alignment

Sequence Alignment. Motivation: Types. Two sequences of same length, some characters are different ( Database search) Aagtacggaga aagcaccgaga Two seq are of different length, possible gaps in one of them ( Database search) Aaccaccgaga Aa-caccgaga. Motivation: Types.

265 views • 25 slides

Hidden Markov Model: An Introduction

548 views • 20 slides

Computational biology and computational biologists

Computational biology and computational biologists . Tandy Warnow, UT-Austin Department of Computer Sciences Institute for Cellular and Molecular Biology Program in Evolution, Ecology, and Behavior Center for Computational Biology and Bioinformatics. Two computational biologists.

415 views • 20 slides

Chapter 10 Phylogenetic Basics

Chapter 10 Phylogenetic Basics. Molecular evolution and molecular phylogenetics. Similarities and divergence between biological sequences are often represented by phylogenetic trees Phylogenetics is the study of the evolutionary history of organisms

360 views • 16 slides

Practice (sort of...)

Practice (sort of...). http://weblogo.berkeley.edu/. Graphical representation of an amino acid or nucleic acid multiple sequence alignment developed by Tom Schneider and Mike Stephens. Exercise: Identify conserved motif in the 50 bases upstream of 350 E. coli genes . Results. MOTIF Search.

221 views • 15 slides

Improving performance of Multiple Sequence Alignment in Multi-client Environments

Improving performance of Multiple Sequence Alignment in Multi-client Environments. Aaron Zollman CMSC 838 Presentation. Overview. Overview of talk CLUSTALW algorithm, speedup opportunities Problems with caching Parallelizing technique Weaknesses

277 views • 12 slides

Malaria

409 views • 10 slides

Sequence Alignments Revisited

Sequence Alignments Revisited. Scoring nucleotide sequence alignments was easier Match score Possibly different scores for transitions and transversions For amino acids, there are many more possible substitutions

276 views • 10 slides

Malaria

335 views • 10 slides