'Pdb file' diaporamas de présentation

Structure databases, searches and alignments

Structure databases, searches and alignments. Marian Novotny marian@xray.bmc.uu.se. Molecular Bioinformatics X3. Outline. Structure databases - why do we need them? - types of structural databases

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?? ? ????? ? Oracle Database 12c

?? ? ????? ? Oracle Database 12c. Mike Dietrich ?????????? Oracle Corporation. Roy Swonger ???? ? ????????. Carol Tagliaferri ????????. Cindy Lim ??????. Joseph Errede ??????. Mike Dietrich ????????. Eric Wittenberg ???????. ????????. ??????. ??. 2007 ? 1 ?. 2010

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A stochastic approach to Molecular Replacement.

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Protein Modeling Challenge Science Olympiad Trial Event

Protein Modeling Challenge Science Olympiad Trial Event. Gary Graper, Event Supervisor Shannon Colton, Ph.D., Event Technical Advisor Jennifer Morris, Ph.D., Event Technical Advisor. Protein Modeling Challenge. To compete successfully in the Protein Modeling Challenge, you will:

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AutoDep 4.0 A data deposition and archival system Sameer Velankar

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A Technical Introduction to the MD-OPEP Simulation Tools

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Number of released entries

Number of released entries. Year. Growth of Molecular Complexity. Number of Structures Containing that Number of Chains. Number of Chains. Year. HEADER COMPLEX (ACETYLATION/ACTIN-BINDING) 30-MAY-97 1HLU

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4. Photosynthesis: antennas and reaction centers

4. Photosynthesis: antennas and reaction centers. 6 CO 2 + 6 H 2 O C 6 H 12 O 6 + 6 O 2. 6 CO 2 + 6 H 2 O + 48 h n C 6 H 12 O 6 + 6 O 2. Synthesizing carbohydrates from CO 2 and water presents a formidable thermodynamic problem:.

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Lab 4.3

Lab 4.3. Comparative Modeling by M ODELLER. Roberto Sanchez Mount Sinai School of Medicine New York, NY, USA. roberto.sanchez@physbio.mssm.edu http://physbio.mssm.edu/~sanchez/. Comparative Modeling by M ODELLER. Using M ODELLER Example 1: Modeling of BLBP

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D2DBT9 - Genetic Analysis and Bioinformatics

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Molecular Mechanics Part 2

Molecular Mechanics Part 2. Potential Energy Surfaces Input File Types Successes, Limitations & Caveats Glossary of Terms. Energy Minimization. Local minimum vs global minimum Many local minima; only ONE global minimum

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A web service for the analysis of macromolecular interactions and complexes

PDB e P rotein I nterfaces, S urfaces and A ssemblies. A web service for the analysis of macromolecular interactions and complexes. Gaurav Sahni, Ph.D. Protein Quaternary Structures (PQS). Assembly of protein chains, stable in native environment.

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A web service for the analysis of macromolecular interactions and complexes

PDB e P rotein I nterfaces, S urfaces and A ssemblies. A web service for the analysis of macromolecular interactions and complexes. Protein Quaternary Structures (PQS). Assembly of protein chains, stable in native environment.

340 views • 18 slides

A web service for the analysis of macromolecular interactions and complexes

PDB e P rotein I nterfaces, S urfaces and A ssemblies. A web service for the analysis of macromolecular interactions and complexes. Summary. What is a protein quaternary structure (PQS)? Difficulties determining PQS Properties of protein contacts Which answers can PISA give?.

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A web service for the analysis of macromolecular interactions and complexes

PDB e P rotein I nterfaces, S urfaces and A ssemblies. A web service for the analysis of macromolecular interactions and complexes. Summary. What is a protein quaternary structure (PQS)? Difficulties determining PQS Properties of protein contacts Which answers can PISA give?.

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Reminder of Day 1 using Insight II

Reminder of Day 1 using Insight II. Use pulldown menus or commands get molecule eg from pdb file display only parts/atoms of interest color different parts/atoms differently render as lines, balls & spokes or CPK. Syntax molecule:residue(s):atom(s) wild card *.

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The set of files includes : Tcl source of the POLYGON program

The Tcl/tk version 3.2 of the POLYGON program 17-01-2009 L.Urzhumtseva, P.V.Afonine, P.D.Adams, A.Urzhumtsev. The purpose of the program : show qualitatively if some models parameters are over- or under-refined

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Motif Space Database Design

Motif Space Database Design. Kiranjit Sidhu. Outline. Schema Design Content of Database Functionality Future Plans. Sample PDB File. Sample PDB File Each PDB File represented as a text file (~ 60K Lines) Inefficient for pattern matching

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Seeing the results of a mutation with a vertex-weighted hierarchical graph

Seeing the results of a mutation with a vertex-weighted hierarchical graph. Debra Knisley and Jeff Knisley Institute for Quantitative Biology Department of Mathematics and Statistics East Tennessee State University Johnson City, TN USA. Reducing the clutter in the view.

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The Protein Data Bank (PDB) & PDB Files

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