'Protein database search programs' diaporamas de présentation

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs. Presented by ??? ??? ??? ???. Outline. BLAST 1.0 BLAST 2.0 The two-hit method Gapped alignment PSI-BLAST Performance evaluation Discussion and Conclusion NCBI website. Statistical preliminaries.

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BLAST

BLAST. B asic L ocal A lignment S earch T ool developed at NCBI by Altschul and collaborators also uses matching of words to table for each sequence as starting point uses a quantitative cutoff rather than strict identity.

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Parsing

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Alcoholism and GRM7

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Takes data and stores it into a hashing function

SSAHA: Sequence Search and Alignment by Hashing Algorithm. Fei Lian, Iyanna Atwell, Owen Astrachan Computer Science Department, Duke University, Durham, North Carolina. Introduction. How SSAHA Works. Related Articles.

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