'Protein interactions' diaporamas de présentation

The STRING database

The STRING database. Michael Kuhn EMBL Heidelberg. protein interactions. example. Tryptophan synthase beta chain E. Coli K12. many sources. genomic context. curated knowledge. experimental evidence. T. literature. 373 genomes. (only completely sequenced genomes). 1.5 million genes.

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Session outline

Session outline. Standards and the problem of data integration Example: PSICQUIC and the PSICQUIC game Introduction to ontologies. Exploring the Gene Ontology -Coffee break- Introduction to protein-protein interactions (PPIs) IntAct : the molecular interactions database at the EBI

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IBGP/BMI 730 Introduction to Bioinformatics Director: Prof. Victor Jin

IBGP/BMI 730 Introduction to Bioinformatics Director: Prof. Victor Jin. Basic Molecular Biology. All living things are made of Cells Prokaryote, Eukaryote Cell Signaling What is Inside the cell: From DNA, to RNA, to Proteins. Cells. Fundamental working units of every living system.

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A Network-based Approach for Predicting Missing Pathway Interactions

A Network-based Approach for Predicting Missing Pathway Interactions. Ankush Bansal 658347261. Outline. Protein-Protein Interactions and Signaling pathway Problem statement and variations of problem Shortest distance algorithm Greedy approach to predict missing edges Other approaches

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Protein-Protein Interaction Motifs in GPCR Presented by: Harpreet K Dhiman Research Associate, Dept. of Pharmacology, Un

Protein-Protein Interaction Motifs in GPCR Presented by: Harpreet K Dhiman Research Associate, Dept. of Pharmacology, Univ. of Pittsburgh. Motifs in GPCR . Introduction to Protein-Protein Interactions in GPCR. Motifs in GPCR . GPCR Interactions Occur in Cytoplasmic Loop. 3rd. 7th.

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PPI network construction and false positive detection

PPI network construction and false positive detection. Jin Chen CSE891-002 2011 Spring. Layout. Protein-protein interaction (PPI) networks PPI network construction PPI network false-positive detection. Background.

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Principles of Glycan Recognition

Principles of Glycan Recognition. Lecture 18, Chapter 4 April 27, 2004 Jeff Esko. Types of Glycan-Binding Proteins. Glycosyltransferases and modifying enzymes Antibodies induced by carbohydrate antigens Animal Lectins: P,C,S,R,L and I-type (Lectures 19-23)

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Gene Control

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Chapter 6C

Chapter 6C. Proteomics. 25 and 27 February, 2004. Structural and Functional Characterization in the Post-genomic era. Overview. Proteomics examines the collection of proteins present in a given type of cell at a given time.

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Amino Acids and Protein Structure

Amino Acids and Protein Structure. Protein structure. Four levels of protein structure Linear Sub-Structure 3D Structure Complex Structure. polarity. Hydrogen Bonding Intermolecular Forces Dipole- Dipole Ion-Dipole Van der Waals. Hydrophobic Effect.

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Using Nanotechnology in Medical Imaging and Diagnosis

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Data Integration Seminar (236806)

Data Integration Seminar (236806). Ron Y. Pinter Spring 2002. Scenarios. Itinerary Geographical bank info Sports statistics Veteran presidents Protein interactions Medical history. Issues. Formats Semantic correspondence Consistency Completeness Temporal effects Performance.

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Functional Analysis of Developmental Genes

Functional Analysis of Developmental Genes. Mutant phenotype associated with gene Generation of mutant phenotype when not already known Targeted gene disruption (transgenic analysis) Mis-expression Ectopic expression Over expression Dominant inhibition Biochemical analysis

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Protein-induced DNA Topology

Protein-induced DNA Topology. Kathleen McClain Hofstra University Mentor: Wilma Olson. Methylase from HAEIII Covalently Bound to DNA PDB ID: 1DCT. DNA Basics. DNA contains the genetic information in most living organisms.

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Protein-Protein Interactions

Protein-Protein Interactions. Spatzle. Toll. RNA Pol II. TFIIF. TFIIB. TFIID. Tube. Tube. core promoter. exon 1. Pella. Pella. TFIIA. Dorsal. Dorsal. Cactus. Kuz. Delta. Eya. CtBP. Gro. So. Su(H ). Detecting Protein-Protein Interactions Yeast 2-Hybrid (Y2H) Assays.

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Protein stability, protein-protein interactions

Protein stability, protein-protein interactions. 11-1. Protein stability - how proteins achieve stability under extreme conditions (class presentation) Protein-protein interactions - recent literature (presentations). Stabilization/destabilization forces affecting proteins. 11-2.

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ABSTRACT

Modifications to MerMade 192 High Throughput synthesizers for Efficient Aptamer Synthesis Dipak Goyal, Paul J. Hatala Archemix Corp., 300 Third Street, Cambridge MA 02129 Jeff Strauss, Jeff Scheumack BioAutomation Corp., 8408 Kenning Court, Plano TX 75024. RESULTS. ABSTRACT

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