'Protein query sequence' diaporamas de présentation

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Previous Lecture: Sequence Alignment Concepts

Previous Lecture: Sequence Alignment Concepts. This Lecture. Introduction to Biostatistics and Bioinformatics Sequence Database Searching. Stuart M. Brown, Ph.D. Center for Health Informatics and Bioinformatics NYU School of Medicine. BLAST Searches GenBank (or a custom database).

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Part I : SEQUENCE COMPARISON

Part I : SEQUENCE COMPARISON. PAIRWISE ALIGNMENT Manisha Brahmachary. OUTLINE. What is sequence Comparison Ways to do Sequence Comparison Dot Plot BLAST FASTA. What is sequence alignment or sequence comparison?.

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LSM2104 Project Guidelines

LSM2104 Project Guidelines. 18 th February 2003. Outline. Setp 0: How to use MS-FrontPage to create web page(s) Go through Step 1 of the project Using known gene to BLAST against pseudomallei genome itself Report the location of CDS Go through Step 2 of the project

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Local alignment, BLAST and Psi-BLAST

Local alignment, BLAST and Psi-BLAST. October 25, 2012 Local alignment Quiz 2 Learning objectives-Learn the basics of BLAST and Psi-BLAST Workshop-Use BLAST2 to determine local sequence similarities. Homework #6 due Nov 1 Chapter 5, Problem 8 Chapter 6, Problems 1 and 4. Local Alignment.

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Sequence Alignment

Sequence Alignment. Two general methods for sequence alignment:. Global alignment: considers similarity across the full extent of the sequences, e.g. MegAlign Local alignment: focuses on regions of similarity in parts of the sequences only, e.g. BLAST programs. Questions:

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Sequence Alignment

Sequence Alignment. Two general methods for sequence alignment:. Global alignment: considers similarity across the full extent of the sequences, e.g. MegAlign Local alignment: focuses on regions of similarity in parts of the sequences only, e.g. BLAST programs. Questions:

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BLAST

BLAST. Introduction to Bioinformatics Anthony Nguyen. BLAST - why?. Sequence alignments provide a powerful way to compare novel sequences with previously characterized genes. Both functional and evolutionary information can be inferred from well designed queries and alignments. BLAST - what?.

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