Repeat detection - PowerPoint PPT Presentation

Genome sequence assembly concepts and methods Shih-Jon Wang May 13, 2008

Genome sequence assembly concepts and methods Shih-Jon Wang May 13, 2008. OUTLINE. Assembly Process Overview Assembly algorithms Repeats Scaffolding Phred/Phrap/Consed Assembly pipelines. Assembly process overview. A Genome Sequencing Project. Building a Library.

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Genome sequence assembly

Genome sequence assembly. Assembly concepts and methods Mihai Pop Center for Bioinformatics and Computational Biology University of Maryland. Building a library. Break DNA into random fragments (8-10x coverage). Actual situation. Building a library.

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863 views • 30 slides

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