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Nucleotides and Nucleic Acids - Lehninger Chapter8

Nucleotides and Nucleic Acids - Lehninger Chapter8

Nucleotides and Nucleic Acids - Lehninger Chapter8. 8.1 Basics 8.2 Structure 8.3 Chemistry 8.4 Nucleotide Function . 8.1 Basics. Building Blocks Canonical and Minor Bases Phosphodiester bonds Naming and Drawing Base Stacking and Pairing. Building Blocks.

By oshin
(970 views)


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RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. What is RNA? Definition of RNA secondary Structure RNA molecule evolution Algorithms for base pair maximisation Chomsky’s Linguistic Hierarchy Stochastic Context Free Grammars & Evolution Miscelaneous topics. Base Pairing From Przytycka. An Example: t-RNA.

By waltersj (0 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. aagacuucggaucuggcgacaccc uacacuucggaugacaccaaagug aggucuucggcacgggcaccauuc ccaacuucggauuuugcuaccaua aagccuucggagcgggcguaacuc. RNA and Translation. RNA and Splicing. Hairpin Loops. Interior loops. Stems. Multi-branched loop. Bulge loop.

By nora (68 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. aagacuucggaucuggcgacaccc uacacuucggaugacaccaaagug aggucuucggcacgggcaccauuc ccaacuucggauuuugcuaccaua aagccuucggagcgggcguaacuc. Hairpin Loops. Interior loops. Stems. Multi-branched loop. Bulge loop. A Context Free Grammar. S  AB Nonterminals: S, A, B

By cyrah (148 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. RNA Structure Prediction. FoldRNA Various graphic display options MFold PlotFold StemLoop. Structural Prediction Limitations. Gunnar von Heijne 1987

By sauda (209 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. aagacuucggaucuggcgacaccc uacacuucggaugacaccaaagug aggucuucggcacgggcaccauuc ccaacuucggauuuugcuaccaua aagccuucggagcgggcguaacuc. Hairpin Loops. Interior loops. Stems. Multi-branched loop. Bulge loop. Context Free Grammars and RNAs. S  a W 1 u

By debra-mcintosh (110 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. aagacuucggaucuggcgacaccc uacacuucggaugacaccaaagug aggucuucggcacgggcaccauuc ccaacuucggauuuugcuaccaua aagccuucggagcgggcguaacuc. Decoding: the CYK algorithm. Given x = x 1 ....x N , and a SCFG G, Find the most likely parse of x

By liesel (88 views)

RNA Secondary Structure

RNA Secondary Structure

RNA Secondary Structure. aagacuucggaucuggcgacaccc uacacuucggaugacaccaaagug aggucuucggcacgggcaccauuc ccaacuucggauuuugcuaccaua aagccuucggagcgggcguaacuc. Stochastic Context Free Grammars. In an analogy to HMMs, we can assign probabilities to transitions: Given grammar

By kaelem (112 views)

RNA secondary structure

RNA secondary structure

6.096 – Algorithms for Computational Biology. RNA secondary structure. Lecture 1 - Introduction Lecture 2 - Hashing and BLAST Lecture 3 - Combinatorial Motif Finding Lecture 4 - Statistical Motif Finding Lecture 5 - Sequence alignment and Dynamic Programming. 8. 2. 6. 9. 5. 7. 1.

By dai (265 views)