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Illu_SNV_analysis_Pipeline

Illu_SNV_analysis_Pipeline. Shiyi.Z. Diagram of analysis process. http://www.broadinstitute.org/gatk/guide/best-practices. Data Pre-processing. NGSQCToolkit filters raw data, and generates QC report. Bowtie2 map filtered data to reference, samtools convert and make duplicates.

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Illu_SNV_analysis_Pipeline