'Scop database' diaporamas de présentation

Mismatch String Kernals for SVM Protein Classification

Mismatch String Kernals for SVM Protein Classification. Christina Leslie, Eleazar Eskin, Jason Weston, William Stafford Noble Presented by Pradeep Anand Ravindranath Mei Sze Lam. Introduction. Problem in Computational Biology

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SCOP: A Structural Classification of Proteins Database

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svinga@itqb.unl.pt rodrigo@itqb.unl.pt almeidaj@musc

TP. sensitivity =. TP + FN. FP. 1 - specificity =. TN + FP. W-metric definition. For two proteins X and Y , calculate aminoacid frequencies f X and f Y . Alphabet A is constituted by the 20 aminoacid Choose one scoring matrix W , e.g., Blosum50, PAM250

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