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Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

By noah
(194 views)

Chapter 03

Chapter 03

Heuristic Problem-Solving. Chapter 03. Solving Problems by Searching: Uninformed Search Strategies. Outline: Ch 03_01_f. Problem-solving agents Ch 03 Sect 3.1 [Ch 03_01_f] Problem types Ch 03 Sect 3.2-3.3 [Ch 03_01_f] Problem formulation Ch 03 Sect 3.1-3,3 [Ch 03_01_f]

By manchu
(74 views)

Design and Analysis of Algorithms

Design and Analysis of Algorithms

Design and Analysis of Algorithms. 4 th Semester Computer Engineering Spring 2015 Conf.dr.ing. Ioana Sora ioana.sora@cs.upt.ro. Our goal:. design algorithms that are correct and efficient. The Need for Correctness.

By trygg
(184 views)

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

By collier
(220 views)

A Review of Binary Search Trees

A Review of Binary Search Trees

A Review of Binary Search Trees. Dr. Gang Qian Department of Computer Science University of Central Oklahoma. Objectives (Sections 10.1 and 10.2). Binary tree Definition Traversal Binary search tree Definition Tree search Insertion Deletion. Binary Tree.

By ethan
(123 views)

Planar point location -- example

Planar point location -- example

Planar point location -- example. Planar point location & persistence (cont). Updates should be persistent since we need all search trees at the end. Partial persistence is enough. Well, we already have the path copying method, lets use it. What do we get ?.

By johnathan
(128 views)

Student Projects in the Course Data Structures

Student Projects in the Course Data Structures

Student Projects in the Course Data Structures. Hristina Mihajloska. Outline. About the course Data Structures Student Projects in Java Gains and Conclusion. About the course Data Structures. Big team for a large number of students  Lectures Ana Madevska-Bogdanova Anastas Mishev

By livana
(70 views)

Introduction to Data Structures and Algorithms Related to Information Retrieval

Introduction to Data Structures and Algorithms Related to Information Retrieval

Introduction to Data Structures and Algorithms Related to Information Retrieval. Ch-2 Frakes and Yates. Contents. Introduction BASIC CONCEPTS Strings Similarity between Strings Regular Expressions Finite Automata DATA STRUCTURES Search Trees Hashing Digital Trees Retrieval ALGORITHMS

By selene
(204 views)

Lecture 39: ( a,b )- and B-Trees

Lecture 39: ( a,b )- and B-Trees

CSC 213 – Large Scale Programming. Lecture 39: ( a,b )- and B-Trees. Announcements. CSC213 final exam has been scheduled: Tuesday, May 10 from 10:15 – 12:15 in OM200 Lab mastery exam also on the schedule Thursday, May 12 from 2:45 – 3:45 in OM119. Problems with Search Trees.

By arella
(106 views)

CSCE 3110 Data Structures & Algorithm Analysis

CSCE 3110 Data Structures & Algorithm Analysis

CSCE 3110 Data Structures & Algorithm Analysis. Rada Mihalcea http://www.cs.unt.edu/~rada/CSCE3110 Search Trees Reading: Chap. 4, Weiss. Sorting with BST. Use binary search trees for sorting Start with unsorted sequence Insert all elements in a BST Traverse the tree…. how ?

By louisa
(148 views)

Non-blocking k- ary Search Trees

Non-blocking k- ary Search Trees

Non-blocking k- ary Search Trees. Trevor Brown – University of Toronto Joanna Helga – York University. Ellen, Fatourou , Ruppert, and van Breugel . Non-blocking binary search trees. In Proc. 29 th ACM Symposium on Principles of Distributed Computing, July 2010. k-ST data structure.

By ellema
(82 views)

Artificial Intelligence

Artificial Intelligence

Artificial Intelligence. Games 2: Alpha Beta . Ian Gent ipg@cs.st-and.ac.uk. Artificial Intelligence. Alpha Beta Search. Part I : The idea of Alpha Beta Search Part II: The details of Alpha Beta Search Part III: Results of using Alpha Beta. Reminder.

By keegan
(153 views)

CSE 473: Artificial Intelligence Spring 2014

CSE 473: Artificial Intelligence Spring 2014

CSE 473: Artificial Intelligence Spring 2014. Hanna Hajishirzi Problem Spaces and Search. slides from Dan Klein, Stuart Russell, Andrew Moore, Dan Weld, Pieter Abbeel , Luke Zettelmoyer. Outline. Agents that Plan Ahead Search Problems Uninformed Search Methods (part review for some)

By rimona
(124 views)

Graphs and Search Trees

Graphs and Search Trees

Graphs and Search Trees. Instructor: Mainak Chaudhuri mainakc@cse.iitk.ac.in. Building a graph. class VertexList { private int vertexId; private VertexList next; public VertexList (int x) { vertexId = x; next = null; } // next slide. Building a graph.

By donkor
(62 views)

Data Structures

Data Structures

Data Structures. 1-D arrays, linearly-linked lists and binary search trees. Overview. This slide show discusses 1-D arrays and compares them with two sorts of linked list, linearly linked lists and binary search trees in regard to their properties in relation to (a) insertion,

By gayora
(69 views)

Secure History Preservation Through Timeline Entanglement

Secure History Preservation Through Timeline Entanglement

Secure History Preservation Through Timeline Entanglement. Petros Maniatis, Mary Baker Computer Science Department Stanford University. What Is History?. A temporal ordering of system events E.g., store a file on disk, sign a document

By alva
(237 views)

CS 541: Artificial Intelligence

CS 541: Artificial Intelligence

CS 541: Artificial Intelligence. Lecture X: Markov Decision Process. Slides Credit: Peter Norvig and Sebastian Thrun. Schedule. TA: Vishakha Sharma Email Address : vsharma1@stevens.edu. Re-cap of Lecture IX. Machine Learning Classification (Naïve Bayes )

By dacian
(98 views)

Introducing the WageIndicator dataset

Introducing the WageIndicator dataset

Introducing the WageIndicator dataset. Kea Tijdens University of Amsterdam Amsterdam Institute for Advanced Labour Studies (AIAS) 15 April 2008, Bussum, NL. What is the web-survey?. WageIndicator Web-survey on work and wages

By ninon
(99 views)

BIM213 – Data Structures and Algorithms

BIM213 – Data Structures and Algorithms

BIM213 – Data Structures and Algorithms. Introduction. Contents. Information about the course Data Structures Algorithms. Course Information. About the course. Course Outline. Iterative algorithms and their analysis Case Study: Iterative Sorting Algorithms

By sierra
(134 views)

David Kauchak cs312

David Kauchak cs312

David Kauchak cs312. Review. Midterm. Will be posted online this afternoon You will have 2 hours to take it watch your time! if you get stuck on a problem, move on and come back Must take it by Friday at 6pm You may use: your book your notes the class notes ONLY these things

By belden
(57 views)

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