Sequence searching - PowerPoint PPT Presentation

Master Course Sequence Alignment Lecture 9 Database searching (3)

C. E. N. T. E. R. F. O. R. I. N. T. E. G. R. A. T. I. V. E. B. I. O. I. N. F. O. R. M. A. T. I. C. S. V. U. Master Course Sequence Alignment Lecture 9 Database searching (3). Dot-plots a simple way to visualise sequence similarity. Filter:

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BIOINFORMATICS Sequences #2

BIOINFORMATICS Sequences #2. Mark Gerstein, Yale University GersteinLab.org/courses/452 (last edit in fall '05). Basic Alignment via Dynamic Programming Suboptimal Alignment Gap Penalties Similarity (PAM) Matrices Multiple Alignment Profiles, Motifs, HMMs Local Alignment

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824 views • 67 slides

Parallel Computation in Biological Sequence Analysis

Parallel Computation in Biological Sequence Analysis. Xue Wu CMSC 838 Presentation. Motivation. Scanning and analyzing biological sequences are common and repeated tasks in molecular biology Homologous sequence searching Based on pairwise alignment

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337 views • 16 slides

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