Supplementary Fig 1. Example matrix and its association rules. Supplementary Fig 2. Results of a fragment search using the example data (PT100553). Supplementary Fig. 3. Results of MS/MS fragmentation association rules.
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Supplementary Fig. 2. Mafa-A1*03203. 56. 99. Mafa-A1*03201. Mafa-A1*03204. 94. Mafa-A1*08906. Mafa-A1*08903. 86. 99. Mafa-A1*08907. 89. 58. Mafa-A1*05401. Mafa-A1*06403. 91. 65. Mafa-A1*09701. Mafa-A1*00802. Mafa-A1*05301. 73. Mafa-A1*05202. Mafa-A1*0630302. 96.
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S.enterica MNTSELETLIRTILSEQLTTPAQTPVQ--------PQGKGIFQSVSEAIDAAHQAFLRYQ 52. K.pneumoniae MNTAELETLIRTILSEKLAPTPPAPQQ--------EQG--IFCDVGSAIDAAHQAFLRYQ 50. L.reuteri MQINDIESAVRKILAEELD-NASSSSANVAATTDNGHRG-IFTNVNDAIAAAKAAQEIYR 58.
a. Stage 1. Stage 2. Stage 3. Stage 4. Stage 5. b. Leaf. Root. Stem. Supplementary Fig. 2
CD3 positive cell counts. nLBA. nLBA. LBA. LBA. (/mm. (/mm. (/mm. ). ). ). 45. 45. 2. 2. 2. 1400. 1400. 1400. 1400. NS. 40. 40. 35. 35. 1200. 1200. 1200. 1200. *. 30. 30. 1000. 1000. 1000. 1000. 25. 25. 800. 800. 800. 800. 20. 20. 600. 600. 600. 600.
Supplementary data Fig 1: Comparison of differential mRNA expression data obtained by qRT-PCR and microarray (relative expression in tumors compared to normal tissues) .