Synteny - PowerPoint PPT Presentation

Outline

Outline. Whole Genome Assembly How it works How to make it work (exercises) Synteny alignments How it works How to make it work (exercises) Transcriptome assembly (RNA- Seq ) How it works How to make it work (exercises) Open questions &amp; future directions.

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Ensembl Compara Perl API

Stephen Fitzgerald http://www.ebi.ac.uk/~stephenf/ edinburgh-workshop/ EBI - Wellcome Trust Genome Campus, UK. compara. Ensembl Compara Perl API. What is Ensembl Compara?. A single database which contains precalculated comparative genomics data. Access via perl API and mysql.

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Welcome to the Gramene Genome Browser Tutorial

The Genome Browser allows you to browse the Rice-Japonica, Maize and Arabidopsis genomes. Users can view the location of a particular marker on the rice genome and examine neighboring genes and markers. You can view the gene model of a candidate gene of interest in order to design primers.

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468 views • 30 slides

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