'Tf binding sites' diaporamas de présentation

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Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. Canadian Bioinformatics Workshops 2009 Module 3 Inferring Regulatory Mechanisms Governing Sets of Genes Wyeth W. Wasserman University of British Columbia. www.cisreg.ca. Module 3: Overview.

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Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Canadian Bioinformatics Workshops 2008 Inferring Regulatory Mechanisms Governing Sets of Genes Wyeth W. Wasserman University of British Columbia. www.cisreg.ca. Co-Expressed. Negative Controls.

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Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. In collaboration with. Cold Spring Harbor Laboratory & New York Genome Center. Contains material by Wyeth Wasserman, William Noble, Michael Hoffman, and Tim Bailey. Module 6 #: Title of Module. 3.

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internationalregulomeconsortium

www.internationalregulomeconsortium.ca. Management Structure. Phase 1 - Genesis - Jul 03-Jan 04. Objective Consult with scientific, management and political resources in order to ascertain viability of large-scale international regulome project Funding

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chIP-chip For Transcriptome Research

chIP-chip For Transcriptome Research. Vidyadhar Karmarkar Genomics and Bioinformatics 414 Life Sciences Building, Huck Institute of Life Sciences. Chromosomal Packaging. Chromatin. 2.9 million bp in haploid human genome 1.5% human genome codes for proteins 20,000 human genes.

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* only 17% of SNPs implicated in freshwater adaptation map to coding sequences

Many, many mapping studies find prevalent noncoding QTLs. * only 17% of SNPs implicated in freshwater adaptation map to coding sequences. Evolution and constraint on cis -regulatory motifs (focusing on TF binding sites).

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Identification of Compositionally Similar Cis -element Clusters in Coordinately Regulated Genes

GeneChip Experiments A set of Coordinately Expressed Genes. ESTs/cDNAs. BlastN/Blat Search for genomic sequence retrieval.

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Introduction: bio-logic

A. B. A. B. A. B. B. A. RNApol. RNApol. +. -. ++. A. B. A. B. Introduction: bio-logic Informal descriptions of experimental observations on gene expression patterns often translate readily into the language of formal logic:. From TF binding to cis- regulatory logic

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