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i-ccs3 locus

sheila-morrison
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i-ccs3 locus

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  1. Figure SF2. Silent combox genes. Nine loci having candidate combox sites (ccs) were described as invariant in Peterson et al., 2000. The actual amplicons tested in their paper are shown (TIGR). Primers (ccsXL or R) for amplifying candidate regions are shown as red arrows. The expression patterns from array SPMAv3 are shown using arrows with different colors. TIGR TIGR SP2097 SP2098 SP2099 SP1415 SP1414 SP1413 5L C ccs5R ccs3R ccs3L SP1412 C 1000 2000 3000 4000 1000 2000 3000 ccs5 locus (4496 bps) i-ccs3 locus (3000 bps) TIGR TIGR SP57 SP58 ccs18R SP2113 ccs10R SP2115 C ccs18L SP60 C SP2114 SP59 ccs10L 1000 2000 3000 4000 1000 2000 3000 ccs18 locus (4200 bps) ccs10 locus (3360 bps) TIGR TIGR SP374 SP373 ccs28R 372 SP1185 ccs25L SP1187 C ccs28L C ccs25R SP1186 1000 2000 3000 1000 2000 3000 i-ccs28 locus (3480 bps) ccs25 locus (3067 bps) TIGR TIGR SP2153 SP2152 SP2151 SP1661 SP1662 SP1664 C ccs33L ccs33R ccs61R ccs61L C SP1663 1000 2000 3000 4000 500 1000 1500 2000 i-ccs33 locus ccs61 locus (4161 bps) (2430 bps) : C, constant putative combox ccsXXL or R, TIGR left or right primer TIGR : No data available : Amplicons used in Peterson et al., 2000 SP833 SP834 SP835 SP836 ccs62R ccs62L C : Induced two fold 1000 2000 3000 4000 : Repressed two fold ccs62 locus (4050 bps) : Constant

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