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BioPSE Open Source Problem-Solving Environment

Explore the BioPSE software system designed for problem-solving, data analysis, and visualization. Discover user guides, demos, and collaboration opportunities. Get support via tutorials, manuals, and direct contact.

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BioPSE Open Source Problem-Solving Environment

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  1. The BioPSE Software System: Releasing and Supporting an Open Source Problem Solving Environment David Weinstein SIAM CSE 02.10.2003 Scientific Computing and Imaging Institute School of Computing University of Utah

  2. Overview • SCIRun PSE’s • Design Goals • Infrastructure • Demos

  3. PSE Relationships

  4. BioPSE: ECG

  5. BioPSE: EEG

  6. RTRT: Interactive Vol Vis

  7. Uintah: Fire-spread (CSAFE)

  8. What If? user guides Integration and Interaction Modeling Simulation Visualization

  9. Elements of SCIRun • Visual programming Environment

  10. Extensibility • Leverage existing utilities • Extensibility through bridges GENESIS Matlab libimage SQL lib socket SCIRun Teem lib mpeg lib

  11. Documentation: User Support • On-line Documentation • Tutorial • User’s Manual • FAQ Lists • Printed Documentation • User’s Manuals • Mailing List • scirun-users@sci.utah.edu • Direct Contact • Email and Bugzilla • Phone

  12. Documentation: Tutorial

  13. Network Design • Dataflow Vocabulary • Module • Dataport • Datapipe • UI • Send and Get • GuiVars • Scheduler • Dependencies • loops: send_intermediate

  14. Fields Data int, float, double, … Vector, Tensor, … PointCloudField Geometry Regular Irregular ScanlineField CurveField QuadSurfField TriSurfField ImageField Properties Data_at (center) TetVolField LatVolField HexVolField

  15. On-the-fly Compilation • Combinatorial Explosion! • Geometry • Data type • Data_at • Build source, compile, link – all at run time

  16. Error Messages • Run-time messages are sent to the module’s “log” Startup messages Log message indicator Gray: no messages Red: error Blue: warning/remark

  17. GUI GUI On the Horizon • GUI Separation • Detachable interface • Collaboration • Custom UI • Scripting • Regression testing • SCIRun2 • CCA State / Event Manager BioPSE GUI

  18. Demos… David Weinstein dmw@sci.utah.edu

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