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Exploring Command Line Usage in Molecular Phylogenetics for File Repetition

This exercise focuses on understanding command line operations for managing molecular phylogenetic files. Participants will evaluate which command line expressions are valid for executing applications and accessing specific tree files. Given the assumption that both `TreeGraph.exe` and the respective `.xtg` files are located within a specified folder structure, users must identify correct expressions and pinpoint which trees will open with the provided commands. This activity enhances familiarity with command line syntax in a biological data context.

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Exploring Command Line Usage in Molecular Phylogenetics for File Repetition

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  1. Command lineandbatchfiles – RepetitionMolecularPhylogenetics – exercise

  2. 1.1 Command linerepetition – Question 1 • Whichofthefollowingexpressionsis/arecorrect? • Assumption: TreeGraph.exeandSome:Tree.xtgarebothcontained in Myfolder. • C:\My Folder\TreeGraph.exe Some_Tree.xtg • "C:\My Folder\TreeGraph.exe" Some_Tree.xtg • "C:\My Folder\TreeGraph.exe" "Some_Tree.xtg" • "C:\My Folder\..\My Folder\TreeGraph.exe" Some_Tree.xtg

  3. 1.2 Command linerepetition – Question2 • WhichoftheTreefiles will beopenedwiththefollowingexpressions? • Folder structure:C:rootTreeGraph TreeGraph.exeTrees Subfolder Tree1.xtg Tree1.xtgSubfolder.xtg • C:\root>TreeGraph\TreeGraph.exe Trees\Tree1.xtg • C:\root>TreeGraph\TreeGraph.exe Trees\Subfolder.xtg • C:\root\Trees\Subfolder>C:\root\TreeGraph\TreeGraph.exe ..\Tree1.xtg • C:\root\Trees>C:\root\TreeGraph\TreeGraph.exe Subfolder\..\Tree1.xtg • C:\root\Trees\Subfolder>C:\root\TreeGraph\TreeGraph.exe ..\Subfolder\Tree1.xtg

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