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This document details the bisulfite conversion and PCR amplification of specific DNA sequences for methylation analysis. It includes information about the top and bottom strands of DNA after conversion, along with the necessary PCR primers. The sequences provided are crucial for studying DNA methylation patterns, particularly focusing on CpG dinucleotides. The key highlight is the conversion process that enables the differentiation of methylated and unmethylated cytosines, facilitating epigenetic studies and applications in genomics research.
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H19 DMR 5’ 3’ GTAGATTTGGTTATAGTTAAATGGATA----ATTTTATAGTTATAAAAGTAGAGGTTGG CATCTAAACCAATATCAATTTACCTAT----TAAAATATCAATATTTTCATCTCCAACC 3’ 5’ PCR 5’ 3’ GTAGATTTGGTTATAGTTAAATGGATA----ATTTTATAGTTATAAAAGTAGAGGTTGG Converted top strand Bisulfite 5’ 3’ GCAGATTTGGCTATAGCTAAATGGACA----ACCCCATAGCCATAAAAGCAGAGGCTGG CGTCTAAACCGATATCGATTTACCTGT----TGGGGTATCGGTATTTTCGTCTCCGACC 3’ 5’ (Beware of CpG dinucleotides in primer sequence) Bisulfite TGTTTAAATTGATATTGATTTATTTGT----TGGGGTATTGGTATTTTTGTTTTTGATT 3’ 5’ Converted bottom strand PCR 5’ 3’ ACAAATTTAACTATAACTAAATAAACA----ACCCCATAACCATAAAAACAAAAACTAA TGTTTAAATTGATATTGATTTATTTGT----TGGGGTATTGGTATTTTTGTTTTTGATT 3’ 5’