'Short reads' diaporamas de présentation

BIO-454 Bio Computing

673 views • 63 slides

Lecture 4. Short Read Alignment

Lecture 4. Short Read Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Massively parallel sequencing and short reads The short read alignment problem Suffix trie/tree/array Burrows-Wheeler Transform (BWT). Part 1.

960 views • 61 slides

Lecture 4. Short Read Alignment

Lecture 4. Short Read Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Massively parallel sequencing and short reads The short read alignment problem Suffix trie/tree/array Burrows-Wheeler Transform (BWT). Part 1.

609 views • 60 slides

An Efficient Algorithm for Read Matching in DNA Databases

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Next-generation sequencing: the informatics angle

Next-generation sequencing: the informatics angle. Gabor T. Marth Boston College Biology Department. Next-generation sequencing. Illumina, AB/SOLiD short-read sequencers. 10 Gb. (5-15Gb in 25-70 bp reads). 1 Gb. 454 pyrosequencer. (100-400 Mb in 200-450 bp reads).

556 views • 55 slides

Whole Genome Sequencing, Assembly and Annotation

Strategy. Libraries. Sequencing. Assembly. Closure. Annotation. Release. Whole Genome Sequencing, Assembly and Annotation. Dr. G P S Raghava (FASc, FNASc), Head Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, INDIA. Introduction.

1.18k views • 45 slides

Next Generation Sequencing, Assembly, and Alignment Methods

Next Generation Sequencing, Assembly, and Alignment Methods . Andy Nagar. Agenda. Background Next Generation Sequencing Sequence Assembly Sequence Alignment Traditional Alignment Algorithms Next Generation Alignment Algorithms Conclusion. Background.

726 views • 35 slides

Assignment 2: Papers read for this assignment

Assignment 2: Papers read for this assignment. Paper 1: PALMA: mRNA to Genome Alignments using Large Margin Algorithms Paper 2: Optimal spliced alignments of short sequence reads. Badil Elhady, Michael Chan . Paper 1: PALMA: mRNA to Genome Alignments using Large Margin Algorithms.

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Genotype and SNP Calling from Next-generation Sequencing Data

Genotype and SNP Calling from Next-generation Sequencing Data. Authors: Rasmus Nielsen, et al. Published in Nature Reviews, Genetics, 2011. Presented by: Jiangbin Lu jiangbin.lu@nus.edu.sg National University of Singapore. Oct 31, 2012. Outline. I: Background and Motivations

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Language Arts/Reading Program Adoption Proposal

Language Arts/Reading Program Adoption Proposal. Susan S. Silver Director of Curriculum and Instruction Monday, April 15, 2013. UMASD K-6 LA/Reading Program Pilot. One teacher per grade level per elementary building = 20 Two 5 th grade and two 6 th grade teachers = 4

332 views • 20 slides

Chris Duran University of Queensland, Australia C.Duran@uq.au

Development of tools for the analysis and visualisation of second generation sequencing data for Brassica species. Chris Duran University of Queensland, Australia C.Duran@uq.edu.au. 1. Outline. Brassica gene and promoter discovery: TAGdb Brassica genome sequencing and annotation

390 views • 20 slides

Mapping Sequence Tags

Mapping Sequence Tags. Advanced Genomic Data Analysis BIOS 691- 804, 2012 Mark Reimers. Raw Data Formats. Proprietary formats for each technology Illumina 454 gives relative luminescence after adding each base. Raw Data Formats. Most common format is FASTQ Four rows per read

316 views • 20 slides

2009-09-10

InCoB 2009. MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads. Hua Bao Sun Yat-sen University, Guangzhou, China Evolution.sysu.edu.cn. 2009-09-10. Next-generation sequencing. High-throughput (tens of millions reads per lane)

293 views • 14 slides

2009-09-10

InCoB 2009. MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads. Hua Bao Sun Yat-sen University, Guangzhou, China Evolution.sysu.edu.cn. 2009-09-10. Next-generation sequencing. High-throughput (tens of millions reads per lane)

213 views • 14 slides

Analysis of DNA Sequence Alignment Tools

Analysis of DNA Sequence Alignment Tools. John Dorband , Yaacov Yesha , and Ashwin Ganesan. Project Goal.

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Novel multi-platform next generation assembly methods for mammalian genomes

Novel multi-platform next generation assembly methods for mammalian genomes.

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Agenda : 3/14/2013

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Genome Resequencing with Short Reads

Mentor: Ryan Cunningham Mentees: Aaron Luo , Naveen Arivazhagan. Motivation. Our Method. Human genome is about 3 billion base pairs long. Sequencing recovers little bits of this genome from random locations.

112 views • 1 slides