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cceHUB Sharing , Exploring and Analyzing Data An Environment for Collaborative Cancer Research

clinical data. observational & scientific data. computation & visualization. decision support. cceHUB Sharing , Exploring and Analyzing Data An Environment for Collaborative Cancer Research. Ann Christine Catlin 6 th Annual Cancer Care Engineering Retreat 05-27-2011.

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cceHUB Sharing , Exploring and Analyzing Data An Environment for Collaborative Cancer Research

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  1. clinical data observational & scientific data computation & visualization decision support cceHUB Sharing , Exploring and Analyzing Data An Environment for Collaborative Cancer Research Ann Christine Catlin 6th Annual Cancer Care Engineering Retreat 05-27-2011

  2. Great Graduate Students ! Ruchith Fernando Lancelot Guoheng Chen SahanGamage Sudheera Fernando Puneet Gupta Sumudinie Fernando Preeti Rao NabeelYousef

  3. cceHUB Advances in 2001 • Clinical Patient Data & Sample Tracking • More detailed and more complete data collection : diagnosis, treatment, surgery, follow-up • New type of data : behavior lifestyle • Customized projects: tissue acquisition

  4. Tissue Acquisition : Clinical Data & Biorepository with Tracking

  5. Data Collection : New Data … More Detailed Data

  6. cceHUB Advances in 2001 • Laboratory Data Upload& Tracking • Repository size >1 TB • Security upgrades • Data verification and validation • Metadata collection • Help with lab uploads … e.g., mass spectrometry data • Always looking for ways to make uploads easier, more complete, and more accessible to analysis tools.

  7. Laboratory data at cceHUB: Some Statistics

  8. Laboratory data at cceHUB: Metadata

  9. cceHUB Advances in 2001 • Analysis Tools / Analysis Data Collections • Proteome Discovery Pipeline • Analysis Data Viewer • Building models & generating results • Output collections for tools • New tools: MacH, Mach Results Visualization, POCRE, Maldi Quantifier, specialized plotting tools

  10. New Analysis Tools

  11. Analysis Data Viewer

  12. Tool Output Collections for Browsing and Analysis

  13. Collaboration : Sharing Idea for Analysis, Getting Results

  14. Our technology extends to other cancer research workflows Using the HUB cyber infrastructure with cceHUB data technology to further collaborative Cancer Care Engineering Research

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