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cceHUB An Environment for Collaborative Cancer Research

clinical data. observational & scientific data. integrative & predictive tools. decision support. cceHUB An Environment for Collaborative Cancer Research. Ann Christine Catlin CCE Annual Retreat May 26, 2010. Predictive Modeling. Sample Collection. Data & Tools.

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cceHUB An Environment for Collaborative Cancer Research

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  1. clinical data observational & scientific data integrative & predictive tools decision support cceHUB An Environment for Collaborative Cancer Research Ann Christine Catlin CCE Annual Retreat May 26, 2010

  2. Predictive Modeling Sample Collection Data & Tools Visual Analytics Clinical Patient Data Laboratory Analysis CCE Research Workflow Sharing Data, Tools, Analysis & Knowledge

  3. May 2010 26 April 2009 2 June 2008 20 cceHUB Building “Community” for Cancer Care Engineering Research cceHUB development begins cceHUB goes online what does cceHUB offer today ?

  4. Clinical Data Statistics on cceHUB Sample and Patient Tracking First patient CCE001 enrolled on April 2, 2009 Most recent patient CCE203 enrolled on May 25, 2010 Maximum patients enrolled on a single day September 23, 2009 = 9 Downtime April 2009 – May 2010 during enrollment transfer cceHUB = 4 hours Oncore = 21 days

  5. Clinical Data Contribution Data Entry and Processing: Support for the Clinical Workflow

  6. Clinical Data Views Data View & Search: Support for Clinical Data Exploration

  7. Laboratory Datasets Statistics on cceHUB Dataset Upload and Tracking First dataset uploaded from Xu Laboratory January 5, 2010 Most recent dataset uploaded from Adamec Laboratory April 12, 2010 Largest file uploaded 190900067bytes April 9, 2010 < 4 seconds transfer time Percent files tracked to patient clinical data 100% Percent files tracked to instrument, laboratory, preparation protocol, samples 100% Percent files available from repository to view, search, process, analyze 100%

  8. Data Repository Upload Data Annotation and Tracking: Support for the Laboratory Workflow

  9. Data Repository Views Data View & Search: Support for Laboratory Data Exploration

  10. Community Viewing Statistics on cceHUB Data View and Search

  11. Modeling Tools cceHUB Tools: Support for Modeling Workflow

  12. Modeling Tools cceHUB Tools: Decision Support for Physicians

  13. Data Analysis Sharing Analyzing, Browsing & Exploring the Data

  14. Using cceHUB Who’s at the Website?

  15. Using cceHUB Who’s Using our Website the Most? acc # logins = 1409 tools used = 12 workspace wall-time = 7218 hours

  16. HUBzero-Powered Leveraging a Powerful Research Environment • User Groups • authorization, secure data, access control, specialized analysis tools • Community-Shared Resources • publications, teaching materials, web-based contribution, linkage, tags, search • Portal to Tools • shared development, execution power, analysis & visualization in your browser • Community feedback • ratings, usage statistics, wikis, blogs

  17. Data Support cceHUB Brings New Data Technology to the HUB • Workflows • serve all research groups, cover complete biological data life-cycle • Massive Datasets • annotate, upload, link to clinical date, archive, backup, share • Clinical Data • link to hospital database, shared across community • contribute, view, search • Knowledge • share across community data, workflows, models, results • Analysis Tools • data access, replay

  18. The Next Phase Collaborative Knowledge Acquisition with Shared Data and Shared Analysis cceHUB plus ThymomaProject with Yale University Medical School Tissue Project with MD Anderson We have the technology! Prostate Cancer Project with Purdue Center for Cancer Research Genomics Project with Notre Dame

  19. The Next Phase What Do You Want cceHUB To Do For You ? Your Image Here

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