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Filtering procedure

Input: Gene Family (Multi-fasta file). Low-complexity masking. CAST. Splices selection. SS*. FILTERING. Filtering procedure. LEON*. Gene id indexing. GI*. Filtered Gene family (Multi-fasta file). Alignment. MAFFT. Alignment refinement. Rascal. MULTIALIGNEMENT. Alignment masking.

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Filtering procedure

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  1. Input: Gene Family (Multi-fasta file) Low-complexity masking CAST Splices selection SS* FILTERING Filtering procedure LEON* Gene id indexing GI* Filtered Gene family (Multi-fasta file) Alignment MAFFT Alignment refinement Rascal MULTIALIGNEMENT Alignment masking AL2CO Gene Family Alignement (PHYLIP Alignement) Bootstrapping alignement (x100) SeqBoot TREE CONSTRUCTION Genetic distance (x100) ProtDist Tree construction (x100) PHYML Rooting tree (x100) SDI Bootstrapped rooted trees (NHX) & genetic distances Set Bootstrap values on PHYML tree SB* ORTHOLOGS INFERENCE Gene id indexing GI* Orthologs Inference DoRIO Output: Orthologs predictions (.txt & NHX files)

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