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FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013

FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013. History. 1999: C reation of original FishNet Network. Z39.50 protocol for sharing data. Search via Species Analyst (distributed query model). 2005: FishNet 2 created. Transition to DiGIR Protocol.

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FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013

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  1. FishNet 2 Collaborative Georeferencing WorkshopLawrence, KS 10-11, Jan 2013

  2. History 1999: Creation of original FishNet Network Z39.50 protocol for sharing data Search via Species Analyst (distributed query model) 2005: FishNet 2 created Transition to DiGIR Protocol Search via DiGIR Portal (distributed query model) 2010: FishNet 2 (centralized query model) Harvesting of DiGIR, DwCA, IPT, Static Spreadsheets Search via FishNet 2 Portal (centralized query model) 2012-2016:Portal &data expansion and enhancement

  3. Global network of fish collections 48 data providers 3.2 million lots 30+ million specimens 57% georeferenced

  4. Generalizing FishNet 2: The Biological Object Search Service (BOSS)

  5. Full Text Searches Common NamesSynonyms Institutional Temporal Geographic

  6. Enabling Spatial Queries

  7. Search Results ProviderSummary Occurrence Records GeographicSummary TaxonSummary

  8. Downloading & Visualizing Results

  9. Search API • Characteristics • “REST” like style • Output in CSV or Tab • API Key to track usage • Services • Taxon • Provider • Occurrence • Occurrence Counts • Allows integration with research workflows Percina aurora www.fishnet2.net/api/v1/occurrence/?api=myapikey&t=percina aurora

  10. Interoperability: RVertNet > library(rvertnet) > f1=vertoccurrence(t="Hypophthalmichthys molitrix",grp="fish") > f2=subset(f1,Latitude !=0 & Longitude != 0) > world = map_data("world") > ggplot(world, aes(long, lat)) + geom_polygon(aes(group = group), fill = "white",color = "gray40", size = .2) + geom_jitter(data = f2, aes(Longitude, Latitude), alpha=0.6, size = 2.5, color = "red") +opts(title = "Hypophthalmichthys molitrix (Silver Carp)") • http://github.com/vijaybarve/rvertnet

  11. Reporting

  12. ReportingDetails

  13. by the Numbers Number of Records Number of Queries or Visitors

  14. Current Project Goals: To expand the number of records within FishNet to approximately 4 million lots representing over 30 million specimens To georeference all "georeferencable" records lacking geographic coordinates To repatriate results to source data providers

  15. Georeferencing Collaborators

  16. “Preliminary” Assignments 2 out of 4 million records in need of georeferencing~290,000 locality records

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