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Using and Extending Darwin Core for structured attribute data

eol.org @ eol @ cydparr. Using and Extending Darwin Core for structured attribute data. Source: www.flickr.com/photos/johnlemon/263411081/. Source: www.flickr.com/photos/johnlemon/263411081/. How EOL works. Third party applications. EOL Today. Milestones in 2013

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Using and Extending Darwin Core for structured attribute data

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  1. eol.org @eol @cydparr Using and Extending Darwin Core for structured attribute data Source: www.flickr.com/photos/johnlemon/263411081/ Source: www.flickr.com/photos/johnlemon/263411081/

  2. How EOL works Third party applications

  3. EOL Today Milestones in 2013 • 1.3 million species pages with content • 250+ content providers • 3.3 million unique annual visitors from 235 countries

  4. Thousands of text objects Subject of text object

  5. The road to TraitBank From text mining From literature tables From data papers From databases In second year of 2 year project: Marine Expert Audience Conservation science Virtuoso triple store <scientific name> <hasAvgBodyMass in g> <value> <scientific name> <preysOn> <scientific name> Beta testing NOW for public launch early 2014 21 datasets with 2.8 million data records for 520,000 taxa Harvest, display, curate, search, download Up soon More data Machine access Direct contribution, upload

  6. Data model for Traits Vernacular Name extension Media extension (with Audubon Core) MeasurementType MeasurementValue References extension Agents extension New class AssociationType

  7. Uploading Darwin Core Archives Common names Taxa ReferencesMeasurementsOrFacts Associations Events Occurrences

  8. Quick facts

  9. Data tab

  10. Expanded data record

  11. Search & Download

  12. Download

  13. Annotation of a specimen record Ovary size and reproductive state Age markers Fat status Body mass and other size attributes

  14. Annotation of an observation record

  15. Participate Public beta now – send me EOL login ASAP Recommend structured data – ANYTIME Provide feedback at demo on Wednesday 5:30pm Nathan Wilson & I talking more about semantics and interoperability on Friday morning 11:36 @cydparr parrc@si.edu

  16. Research Sprint proposals due Nov 15 • 4 day workshop at NESCent • Use BHL or EOL and other sources to tackle biological questions • Will match each awardee with informatics expert (contact me, prefer BHL/EOL API or content partner experience) @cydparr parrc@si.edu Thanks to Lounsbery Foundation & David Rubenstein

  17. Cynthia Parr Chief Scientist @eol @cydparrparrc@si.edu Thanks github.com/eol Co-authors: Patrick Leary, Jennifer Hammock, Katja Schulz, Nathan Wilson Contributors Image credits Michal Koupy and biolib.cz Jenny from Taipei Janet Hinshaw, UMMZ Ken-ichi Ueda msr Our content partners Thousands of individual contributors, and hundreds of volunteer curators EOL Science Advisors Private beta survey respondents Funding Alfred P. Sloan Foundation Smithsonian Institution David Rubenstein Marine Biological Laboratory Lounsbery Foundation Harvard University

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