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ReproZip Packing Experiments for Sharing and Publication

ReproZip Packing Experiments for Sharing and Publication. Visions for the Future . Fernando Chirigati , Juliana Freire | NYU-Poly Dennis Shasha | NYU. Reproducibility. ReproZip : Packing Experiments for Sharing and Publication. How to allow computational reproducibility!?

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ReproZip Packing Experiments for Sharing and Publication

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  1. ReproZipPacking Experiments for Sharing and Publication Visions for the Future Fernando Chirigati, Juliana Freire|NYU-Poly Dennis Shasha| NYU

  2. Reproducibility ReproZip: Packing Experiments for Sharing and Publication • How to allow computational reproducibility!? • It is difficult to achieve in most cases • Some current solutions require the user to adopt a system • e.g.: scientific workflow systems • Other solutions rely on capturing information about the computational environment • e.g.: virtual machines How to encapsulate my experiment?Too many dependencies…Too many files to keep track… Sigh. How to compile this program?How to execute it? How to explore it? Sigh. ReviewersCollaborators Readers Author Fernando Chirigati – NYU-Poly

  3. ReproZipto the rescue! ReproZip: Packing Experiments for Sharing and Publication packing (on environment E) Experiment Provenance Tree Workflow Author files + binaries + workflow unpacking (on environment E’ – compatible w/ E) verification and exploration Experiment Extraction files + binaries + workflow ReviewersCollaborators Readers Reproducible Package Reproducible Package Fernando Chirigati – NYU-Poly

  4. Thank You! ReproZip: Packing Experiments for Sharing and Publication, F. Chirigati, D. Shasha and J. Freire. SIGMOD’13 Demo Session, New York, NY, USA, 2013 – To be presented ReproZip: Using Provenance to Support Computational Reproducibility, F. Chirigati, D. Shasha and J. Freire. 5th USENIX conference on Theory and Practice of Provenance (TaPP'13), Lombard, IL, USA, 2013 – To be presented Fernando Chirigati fchirigati@nyu.edu http://vgc.poly.edu/~fchirigati

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