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Introducing InforSense

Introducing InforSense. Kanishka Karunanayake kanishka@inforsense.com. Why Scientific Workflow?. Today researchers and decision-makers need effective and timely access to the right information, expertise and derived knowledge to fuel innovation and drive productivity The Workflow Paradigm

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Introducing InforSense

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  1. Introducing InforSense Kanishka Karunanayakekanishka@inforsense.com

  2. Why Scientific Workflow? • Today researchers and decision-makers need effective and timely access to the right information, expertise and derived knowledge to fuel innovation and drive productivity • The Workflow Paradigm • Describes the process of transforming and analysing data to deliver the desired insights • And provides the glue to integrate distributed applications

  3. What does InforSense do? • We provide a workflow engine that: • Provides an open Integrative Analytics environment that ties together your information resources and software applications across domains and functions • Supports innovation and capture of the best work practices of your scientific/business decision making • Leverages the scalability of Oracle • We provide workflow warehousing to: • Manage decision making processes across your organisation • Construct an enterprise process/workflow knowledge bank where it is easy to modify and reuse workflows • We provide flexible workflow deployment engines to: • Turn your workflows into reusable decision services in a manner best suited to your users (web services, client/server, portals, or .net clients) • Provide the appropriate capabilities to your researchers, informaticians, and managers

  4. ID Business Solutions Ubiquitous Workflows, Warehouses and Deployment Engines Workflow Warehouse Deployed Applications Expert User /Analyst Integrative Analytics Workflow Environment Analytics Experiment & design Enumeration &descriptors Lab & analytical data Compound & activity data Databases & documents Visualization Heterogeneous Data, Applications, Analytic Components

  5. InforSense Architecture Overview Client Tier InforSense Client InforSense .net Client 3rd Party Clients Webservices Deployment Strategies Command Line Strategy Native Executables Java Component Strategy Web Services Strategy Batch Systems Sun Grid Engine, LSF Browser Authentication services JAAS e.g. LDAP, ActiveDirectory J2EE JBoss App Server Tier Third Tier Services RDBMS RMI InforSense EJBs Userspace Execution Data management Node SDK Server API JDBC SOAP RMI/SOAP SOAP Inforsense Web Service Engine RMI JAAS Workflow Warehousing HTTP/HTTPS Oracle

  6. Openness: Working with any vendors Retrieve data from ABase Combine PP data columns with ongoing analysis Analyse in Spotfire and return results set to KDE for further analysis Searching Oracle DB using JChem Cartridge Add derived columns from xls file Analyse in PP Output SD file Input list to pipeline pilot Output list of IDs for screening

  7. Deployment: Building Personal Applications Molecular Input View Result • Deployment : Vertical applications created from workflows • Create workflow using InforSense client • Deploy by point and click GUI Deployed Workflow • Define properties • Define actions • Deploy

  8. Deployment: Building Personal Applications

  9. ChemAxon Integration Path

  10. Workflows incorporating ChemAxon Technology <Workflow Movies>

  11. Analysis of Lymphoma Genomic Data -- Searching for Relevant Genes and New Drugs Demo implements an expanded version of an original method reported in: Shipp et al Nature Medicine January 2002 Volume 8 Number 1 pp 68 – 74. Methodology Data AcquisitionMultiple Types of AnalysisRelevant Results • Genes • Papers • Pathways • Candidate Drugs • E.g. Eli Lily’s Protein Kinase C Inhibitor LY317615 Visualization Gene Expression Data Literature Search/Text Mining Relevant Genes Candidate Drug Search Prediction Model Patient Data Cellular Pathway Analysis Sequence Analysis

  12. Drug Search

  13. ROI - Integrative Analysis Example Novel Discovery & Knowledge Workflows Novel Indication for existing Protein Kinase C Inhibitor LY317615 • Without InforSense • 3 People • 90 Days • 1000’s of lines of customised code • With InforSense • 1 Person • 10 Days • 60 Nodes • Share reusable workflows and data • Collaborate on all aspects of work • Flexibility, automation and reproducibility • Rapid application deployment

  14. InforSense Introduction & Mission • Company founded Nov 1999 to commercialize Imperial College large scale integrative analytics IP • 50 staff plus 20 developers in Shanghai London (HQ) Shanghai European Field Office Japanese Distributors Cambridge, MA • 6 out of top 15 pharma are customers Mission: • Provide market leading integrative analytics software to enable enterprises to create, integrate, and leverage decision making knowledge more effectively Windber Research Institute

  15. Customer Comments… “... The challenge is both to facilitate this dynamic and iterative [decision making] process, and at the same time, capture the key decisions that are made so they can be improved over time.” “… InforSense workflow technology provides a scalable integration solution, enabling our scientists to develop, enhance and share discovery services. With InforSense, we will ensure that the technology we build our infrastructure upon is an industry standard.” – Stephen Calvert, Vice President, Cheminformatics, GSK. “… [InforSense’s] proven multi-platform integration will enable us to exploit our existing informatics investment and provide a highly extensible discovery environment for the future." – Dr. Herbert Köppen, Head of Chemoinformatics, Boehringer Ingelheim “I believe this is the best software for analysis, visualization and integration …” – Dr. Keisuke Imai, Chief Technical Scientist, Fujisawa Pharmaceutical Co.

  16. Contact InforSense InforSense Limited 459a Fulham Road London SW10 9UZ (UK)t: +44 (0) 20 7808 9500 f: +44 (0) 20 7808 9501 InforSense LLC25 Moulton StreetCambridge, MA 02138 (USA) t: +1 617 547 2500f: +1 617 547 2772 Additional information can be found at www.inforsense.com For enquiries, product information and collaboration, please email me at: kanishka@inforsense.com

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