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The multi-laboratory project management The Global Project Tracking System

The multi-laboratory project management The Global Project Tracking System Lukasz Szajkowski 1, 3, Anuradha Padki 2, 3, Paola Pace 2, 3, Kristen M Taylor 1, 3, Leila A Hornick 2, 3, Greg M Werner 1, 3, Darren M Platt 1, 3 1. Lawrence Livermore National Laboratory

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The multi-laboratory project management The Global Project Tracking System

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  1. The multi-laboratory project management The Global Project Tracking System Lukasz Szajkowski 1, 3, Anuradha Padki 2, 3, Paola Pace 2, 3, Kristen M Taylor 1, 3, Leila A Hornick 2, 3, Greg M Werner 1, 3, Darren M Platt 1, 3 1. Lawrence Livermore National Laboratory 2. Lawrence Berkeley National Laboratory 3. DOE Joint Genome Institute (JGI)

  2. Sequencing process at the JGI Global Project Tracking System GPTS – technology GPTS Data and interface System Architecture Data exchange Agenda

  3. Human Genome JGI – Joint Genome Institute ~25 12 6 2 2 1 1997 2001 2002 2003 2004 2005 2006 2007

  4. Sequencing process Users CSP Stanford DNA/Library LANL Sequencing ORNL Assembly JGI LLNL Annotation Users Distribution

  5. Venonat Create library meetings Web pages Twiki emails Sequencing process Users CSP Stanford DNA/Library LANL Sequencing ORNL Assembly JGI LLNL Annotation ? Users Distribution

  6. Venonat Create library meetings Web pages Twiki emails Sequencing process – black hole Users CSP Stanford DNA/Library LANL Sequencing ORNL Assembly JGI LLNL Anntotation ? Users Distribution

  7. Venonat Create library Global Project Tracking System CSP Stanford DNA/Library GPTS LANL Sequencing ORNL Assembly JGI LLNL Annotation Users Distribution

  8. Three tier application Java Swing client + Java Web Start JavaServer Faces client SOAP + SSL between client and server Hibernate - Relational Persistence GPTS – technology

  9. Attributes Name, type ProjectData Value Projects Name, type GPTS Data and interface

  10. Attributes Name, type ProjectData Value Projects Name, type System Architecture :System :System :Component GPTS Database GPTS Kiwi Global Project Tracking System :Component :Interface GPTS Server SOAP Hibernate SOAP SOAP Attributes SOAP Projects SOAP ProjectData :Component SOAP GPTS Web :System Grum - Authorization

  11. Attributes Name, type ProjectData Value Projects Name, type System Architecture :System :System GPTS Database Global Project Tracking System :Component GPTS Server Hibernate SOAP Attributes SOAP Projects SOAP ProjectData SOAP :System Grum - Authorization

  12. Attributes Name, type ProjectData Value Projects Name, type System Architecture :System :System GPTS Database Global Project Tracking System :Component GPTS Server Hibernate SOAP Attributes SOAP Projects SOAP ProjectData SOAP :System Grum - Authorization

  13. System Architecture

  14. Attributes Name, type ProjectData Value Projects Name, type System Architecture :System :System GPTS Database Global Project Tracking System :Component GPTS Server Hibernate SOAP Attributes Java Web Start SOAP Projects SOAP ProjectData SOAP :System Grum - Authorization

  15. GPTS UI

  16. Attributes Name, type ProjectData Value Projects Name, type Data exchange JGI :System :System Venonat GPTS Database Global Project Tracking System ORNL Create library pipeline :Component Stanford GPTS Server SOAP Hibernate pipeline SOAP Attributes SOAP SOAP Projects SOAP ProjectData SOAP :System LANL Grum - Authorization LLNL

  17. Filter sharing Email notification Data history Web reports Project status page Flexible API calls Future releases

  18. GPTS Team Anu Padki Paola Pace Kristen Taylor Amber Shao Greg Werner Darren Platt Contact Lukasz Szajkowski szajkowski2@llnl.gov Acknowledgement Very active users • Lynne Goodwin • David Bruce • Harris Shapiro • Fang Cheng • Kerrie Barry • Erika Lindquist

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