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Mastering Software Applications for Gene Visualization and Protein Design

Explore innovative software applications for visualizing human genome data and protein structures. This course is designed to teach you how to use tools like Jmol and IGV for 3D protein modeling and genome analytics. Learn practical skills through simulations and problem-solving tasks designed for any user. Whether you’re a beginner or a professional, you’ll gain insights into designing proteins in 2D and understanding complex biological data. Join us to overcome challenges and enhance your knowledge in bioinformatics software.

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Mastering Software Applications for Gene Visualization and Protein Design

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  1. Software in 7.00x Brian White Michelle Mischke Mary Ellen Wiltrout

  2. Applications TypeTaskExamples Visualizationdraw conclusionsJmol/IGV Simulationsolve problemVGL achieve outcomeGeneX, 2-d Proteins, etc.

  3. Protein 3-d Structures: Jmol

  4. Human Genome Data: IGV

  5. Applications TypeTaskExamples Visualizationdraw conclusionsJmol/IGV Simulationsolve problemVGL achieve outcomeGeneX, 2-d Proteins, etc.

  6. Designing Proteins in 2-dimensions

  7. General Purpose Tools “Magnifying glass” “Drag and drop”

  8. What can different people get from the class? “Anyone, anywhere can use all of it” “What do you expect with stone tools?” “If you’re not equipped; this course is not for you” Challenge problems

  9. Other lessons learned: • Test test test • Platforms & users • Bug or misconception? • Randomization • javapocalypse • java web start BAD • javascriptSLOW • Flexibility for future problems • Video tutorials

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