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Te Pas et al Additional File 3

Te Pas et al Additional File 3

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Te Pas et al Additional File 3

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  1. Te Pas et alAdditional File 3 Detailed graphical representation of the main pathway results

  2. Explanation to read the Figures • Circles – denote genes with data on the microarray • Boxes – indicate regulated processes / other pathways • Colour code • No colour: no up or down regulation • Green: up regulation • Red: down regulation • Blue: probably regulated, direction uncertain

  3. Adherens junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  4. Adherens junctionLine differences control / infected Exp 3: control Exp 4: infected

  5. Adipocytokine signaling Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  6. Adipocytokine signaling Line differences control / infected Exp 3: control Exp 4: infected

  7. Aminosugars metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  8. Aminosugars metabolism Line differences control / infected Exp 3: control Exp 4: infected

  9. Androgen and Estrogen metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  10. Androgen and Estrogen metabolismLine differences control / infected Exp 3: control Exp 4: infected

  11. ApoptosisLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  12. ApoptosisLine differences control / infected Exp 3: control Exp 4: infected

  13. Beta-Alanine metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  14. Beta-Alanine metabolism Line differences control / infected Exp 3: control Exp 4: infected

  15. Arachidonic acid metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  16. Arachidonic acid metabolismLine differences control / infected Exp 3: control Exp 4: infected

  17. Axon guidanceLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  18. Axon guidanceLine differences control / infected Exp 3: control Exp 4: infected

  19. B cell receptor signaling Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  20. B cell receptor signaling Line differences control / infected Exp 3: control Exp 4: infected

  21. Benzoate degradation via CoA ligationLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  22. Benzoate degradation via CoA ligationLine differences control / infected Exp 3: control Exp 4: infected

  23. Bile acid biosynthesisLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  24. Bile acid biosynthesisLine differences control / infected Exp 3: control Exp 4: infected

  25. Caprolactam degradation Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  26. Caprolactam degradation Line differences control / infected Exp 3: control Exp 4: infected

  27. Cell adhesion molecules Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  28. Cell adhesion molecules Line differences control / infected Exp 3: control Exp 4: infected

  29. Cell communication / Cell junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  30. Cell communication / Cell junctionLine differences control / infected Exp 3: control Exp 4: infected

  31. Circadian rhythmLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  32. Circadian rhythmLine differences control / infected Exp 3: control Exp 4: infected

  33. Complement and Coagulation cascadesLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  34. Complement and Coagulation cascadesLine differences control / infected Exp 3: control Exp 4: infected

  35. Cytokine-cytokine receptor interactionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  36. Cytokine-cytokine receptor interactionLine differences control / infected Exp 3: control Exp 4: infected

  37. Dorso-ventral axis formationLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  38. Dorso-ventral axis formationLine differences control / infected Exp 3: control Exp 4: infected

  39. Fatty acid metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  40. Fatty acid metabolismLine differences control / infected Exp 3: control Exp 4: infected

  41. Focal adhesionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  42. Focal adhesionLine differences control / infected Exp 3: control Exp 4: infected

  43. Gap junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  44. Gap junctionLine differences control / infected Exp 3: control Exp 4: infected

  45. Glutatione metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B

  46. Glutatione metabolismLine differences control / infected Exp 3: control Exp 4: infected

  47. Glycerolipid metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  48. Glycerolipid metabolism Line differences control / infected Exp 3: control Exp 4: infected

  49. Gly, Ser, Thr metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B

  50. Gly, Ser, Thr metabolism Line differences control / infected Exp 3: control Exp 4: infected