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Accelerated Linear Algebra Libraries

Accelerated Linear Algebra Libraries. James Wynne III NCCS User Assistance. Accelerated Linear Algebra Libraries. Collection of functions to preform mathematical operations on matrices

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Accelerated Linear Algebra Libraries

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  1. Accelerated Linear Algebra Libraries James Wynne III NCCS User Assistance

  2. Accelerated Linear Algebra Libraries • Collection of functions to preform mathematical operations on matrices • Designer has re-written the standard LAPACK functions to make use of GPU accelerators to speed up execution on large matrices

  3. Accelerated Linear Algebra Libraries Magma Host Interface

  4. MAGMA - Host • MAGMA stands for Matrix Algebra on GPU and Multicore Architecture • Developed by the Innovative Computing Laboratory at the University of Tennessee • Host interface allows easy porting from CPU libraries (like LAPACK) to MAGMA’s accelerated library • Automatically manages data allocation and transfer between CPU (Host) and GPU (Device)

  5. MAGMA - Host • Fortran: • To run MAGMA functions from Fortran, an Interface block needs to be written for each MAGMA function that’s being called. These interfaces will be defined file magma.f90 • Example: module magma Interface Integer Function magma_sgesv(n,nrhs,…)& BIND(C,name=“magma_sgesv”) use iso_c_binding implicit none integer(c_int), value :: n integer(c_int), value :: nrhs … end Function end Interface end module

  6. MAGMA - Host • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Integer(C_INT) :: piv(3), ok, status !Fill your `A` and `b` arrays then call !MAGMA_SGESV status = magma_sgesv(3,1,A,3,piv,b,3,ok) !Loop through and write(*,*) the contents of !array `b` end Program

  7. MAGMA - Host • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Integer(C_INT) :: piv(3), ok, status !Fill your `A` and `b` arrays then call !MAGMA_SGESV status = magma_sgesv(3,1,A,3,piv,b,3,ok) !Loop through and write(*,*) the contents of !array `b` end Program

  8. MAGMA - Host • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Integer(C_INT) :: piv(3), ok, status !Fill your `A` and `b` arrays then call !MAGMA_SGESV status = magma_sgesv(3,1,A,3,piv,b,3,ok) !Loop through and write(*,*) the contents of !array `b` end Program

  9. MAGMA - Host • Before compiling, Make sure the MAGMA module, CUDA toolkit and the GNU programming environment is loaded • magma.f90: Contains the Interface block module • sgesv.f90: Contains the Fortran source code • To compile: $ module swap PrgEnv-pgiPrgEnv-gnu $ module load cudatoolkit magma $ ftn magma.f90 –lcuda –lmagma –lmagmablas sgesv.f90

  10. MAGMA - Host • C: • In C source code, no kind of interface block is needed like in Fortran • Simply #include<magma.h> in your code • When declaring variables to use with MAGMA functions, use magma_int_tinstead of C’s inttype. Matrices for MAGMA’s SGESV are of type float

  11. MAGMA - Host • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and call magma_sgesv() magma_sgesv(m,n,A,m,piv,b,m,&info); //Loop through and print out returned array b }

  12. MAGMA - Host • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and call magma_sgesv() magma_sgesv(m,n,A,m,piv,b,m,&info); //Loop through and print out returned array b }

  13. MAGMA - Host • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and call magma_sgesv() magma_sgesv(m,n,A,m,piv,b,m,&info); //Loop through and print out returned array b }

  14. MAGMA - Host • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and call magma_sgesv() magma_sgesv(m,n,A,m,piv,b,m,&info); //Loop through and print out returned array b }

  15. MAGMA - Host • Before compiling, Make sure the MAGMA module, CUDA toolkit and the GNU programming environment is loaded • To compile: $ module swap PrgEnv-pgiPrgEnv-gnu $ module load cudatoolkit magma $ cc –lcuda –lmagma –lmagmablassgesv.c

  16. Accelerated Linear Algebra Libraries Magma Device Interface

  17. MAGMA - Device • MAGMA Device interface allows direct control over how the GPU (device) is managed • Memory allocation and transfer • Keeping matrices on the device

  18. MAGMA - Device • Fortran: • To run MAGMA device functions from Fortran, an Interface block needs to be written for each MAGMA function that’s being called. This is not required in C source code • Device functions suffixed with _gpu • CUDA Fortran used to manage memory on the device • All interface blocks need to be defined in a module (module magma) • If module exists in a separate file, file extension must be .cuf, just like the source file

  19. MAGMA - Device • Example: module magma Interface Integer Function magma_sgesv_gpu(n,nrhs,dA…)& BIND(C,name=“magma_sgesv_gpu”) use iso_c_binding use cudafor implicit none integer(c_int), value :: n integer(c_int), value :: nrhs real (c_float), device, dimension(:)::dA(*) … end Function end Interface …

  20. MAGMA - Device • Also need the MAGMA initialize function (defined in the same interface block module): … Interface Integer Function magma_init() & BIND(C,name=“magma_init”) use iso_c_binding implicit none end Function end Interface end module

  21. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use cudafor use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Real(C_FLOAT),device,dimension(:,:) :: dA Real(C_FLOAT),device,dimension(:) :: dB Integer(C_INT),value :: piv(3), ok, status

  22. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use cudafor use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Real(C_FLOAT),device,dimension(:,:) :: dA Real(C_FLOAT),device,dimension(:) :: dB Integer(C_INT),value :: piv(3), ok, status

  23. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma Program SGESV !Include the module that hosts your interface use magma use cudafor use iso_c_binding !Define your arrays and variables Real(C_FLOAT) :: A(3,3), b(3) Real(C_FLOAT),device,dimension(:,:) :: dA Real(C_FLOAT),device,dimension(:) :: dB Integer(C_INT),value :: piv(3), ok, status

  24. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma !Fill your `A` and `b` arrays then initialize !MAGMA status = magma_init() !Copy filled host arrays `A` and `b` to `dA` !and `dB` using CUDA Fortran dA = A dB = b !Call the device function status = magma_sgesv_gpu(3,1,dA,3,piv,dB,3,ok) !Copy results back to CPU b = dB !Loop through and write(*,*) the contents of !array `b` end Program

  25. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma !Fill your `A` and `b` arrays then initialize !MAGMA status = magma_init() !Copy filled host arrays `A` and `b` to `dA` !and `dB` using CUDA Fortran dA = A dB = b !Call the device function status = magma_sgesv_gpu(3,1,dA,3,piv,dB,3,ok) !Copy results back to CPU b = dB !Loop through and write(*,*) the contents of !array `b` end Program

  26. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma !Fill your `A` and `b` arrays then initialize !MAGMA status = magma_init() !Copy filled host arrays `A` and `b` to `dA` !and `dB` using CUDA Fortran dA = A dB = b !Call the device function status = magma_sgesv_gpu(3,1,dA,3,piv,dB,3,ok) !Copy results back to CPU b = dB !Loop through and write(*,*) the contents of !array `b` end Program

  27. MAGMA - Device • Pseudo-code for a simple SGESV operation in magma !Fill your `A` and `b` arrays then initialize !MAGMA status = magma_init() !Copy filled host arrays `A` and `b` to `dA` !and `dB` using CUDA Fortran dA = A dB = b !Call the device function status = magma_sgesv_gpu(3,1,dA,3,piv,dB,3,ok) !Copy results back to CPU b = dB !Loop through and write(*,*) the contents of !array `b` end Program

  28. MAGMA - Device • Before compiling, Make sure the MAGMA module, CUDA toolkit and the PGI programming environment is loaded • magma.cuf: Contains module of Interface blocks • sgesv.cuf: Contains the Fortran source • To compile: $ module load cudatoolkit magma $ ftnmagma.cuf –lcuda –lmagma –lmagmablassgesv.cuf

  29. MAGMA - Device • C: • In C Device source code, no kind of interface block is needed like in Fortran • Simply #include<magma.h> in your code • When declaring variables to use with MAGMA functions, use magma_int_tinstead of C’s inttype. Matrices for MAGMA’s SGESV are of type float • Before running any MAGMA Device code, magma_init()must be called.

  30. MAGMA - Device • C: • To interact with the device (Allocate matrices, transfer data, etc) use the built in MAGMA functions • Allocate on the device: magma_dmalloc() • Copy matrix to device: magma_dsetmatrix() • Copy matrix to host: magma_dgetmatrix()

  31. MAGMA - Device • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; float *A_d, *b_d //Device pointers magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and allocate device //matrices magma_dmalloc(&A_d, m*m); magma_dmalloc(&b_d, m);

  32. MAGMA - Device • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; float *A_d, *b_d //Device pointers magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and allocate device //matrices magma_dmalloc(&A_d, m*m); magma_dmalloc(&b_d, m);

  33. MAGMA - Device • Example code for C: #include<magma.h> #include<stdio.h> int main() { //Define Arrays and variables for MAGMA float b[3], A[3][3]; float *A_d, *b_d //Device pointers magma_int_t m = 3, n = 1, piv[3] ok; //Fill matrices A and b and allocate device //matrices magma_dmalloc(&A_d, m*m); magma_dmalloc(&b_d, m);

  34. MAGMA - Device • Example code for C: //Transfer matrices to device magma_dsetmatrix(m,m,A,m,A_d,m); magma_dsetmatrix(m,n,b,m,b_d,m); //Call the device sgesv function magma_sgesv_gpu(m,n,A_d,m,piv,b_d,m,&info); //Copy back computed matrix magma_dgetmatrix(m,n,b_d,m,b,m); //Loop through and print out returned array b }

  35. MAGMA - Device • Example code for C: //Transfer matrices to device magma_dsetmatrix(m,m,A,m,A_d,m); magma_dsetmatrix(m,n,b,m,b_d,m); //Call the device sgesv function magma_sgesv_gpu(m,n,A_d,m,piv,b_d,m,&info); //Copy back computed matrix magma_dgetmatrix(m,n,b_d,m,b,m); //Loop through and print out returned array b }

  36. MAGMA - Device • Example code for C: //Transfer matrices to device magma_dsetmatrix(m,m,A,m,A_d,m); magma_dsetmatrix(m,n,b,m,b_d,m); //Call the device sgesv function magma_sgesv_gpu(m,n,A_d,m,piv,b_d,m,&info); //Copy back computed matrix magma_dgetmatrix(m,n,b_d,m,b,m); //Loop through and print out returned array b }

  37. MAGMA - Host • Before compiling, Make sure the MAGMA module, CUDA toolkit and the GNU programming environment is loaded • To compile: $ module swap PrgEnv-pgiPrgEnv-gnu $ module load cudatoolkit magma $ cc –lcuda –lmagma –lmagmablassgesv_gpu.c

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