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Advancements in Genetic Data Curation and Collaboration

Explore the growth of genetic data, curation of variation data, large-scale allele projects, strain data, and genetic map development presented at SAB 2010. Learn about manual literature curation, feature curation, and fostering biocuration through forums and meetings. Discover future plans and key collaborators in the field.

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Advancements in Genetic Data Curation and Collaboration

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  1. Genetic Data in Mary Ann Tuli Presented by Anthony Rogers

  2. Growth of Genetic Data SAB 2010

  3. Growth in Manually Curated Variation Data • Nearly 5000 • Description of lesion • Connection to sequence • In maintenance SAB 2010

  4. Large Scale Allele Projects • NemaGENETAG project data all submitted • Phenotype information for NRBP alleles sent to CalTech • CNV data from KO Consortium SAB 2010

  5. Strain Data • Ongoing collaboration with the CGC SAB 2010

  6. elegans map will be frozen once optimised Selected data then incorporated briggsae genetic map is work in progress Genetic Map Data SAB 2010

  7. Manual Literature curation - >5000 features ~90 papers curated ~50 pending papers Captures Binding sites 426 (from 81 papers) Binding site regions 4527 (mainly from modENCODE) Promoters 73 (mainly from 1 paper) Regulatory regions 46 (from 46 papers) Feature Curation SAB 2008

  8. Orthologs connections stored in Geneace names mainly automatically assigned Nomenclature guidelines available in Wiki Other Genomes SAB 2010

  9. Promotes biocuration and provides forum for information exchange through meetings and workshops. 200 members 3rd meeting – Berlin, Spring 2009 1 talk, 4 posters 4th meeting – Japan, Autumn 2010 SAB 2010

  10. Feature literature curation - maintenance Improved capture of data - CalTech Future Plans Collaborators Nomenclature - Jonathan Hodgkin The CGC- Ann Rougvie & AricDaul The Knockout Consortium - Mark Edgley National BioResource Centre, Japan - Shohei Mitani NemaGENETAG- Laurent Ségalat AceDB SAB 2010

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