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Advanced Computational Approaches in Genomics, Design Studies, and Visualization Techniques

This comprehensive overview explores the intersection of comparative functional genomics, design studies, and advanced visualization techniques. Highlighting innovative projects like MizBee for gene expression analysis, large-scale system monitoring with LiveRAC, and advanced dimensionality reduction using MDSteer, it investigates the impact of visual design on data interaction through user studies. Key contributions from Tamara Munzner at UBC fuel discussions on effective visual analysis and complex data navigation, enhancing understanding in both biological and computational domains.

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Advanced Computational Approaches in Genomics, Design Studies, and Visualization Techniques

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  1. Biology Design Studies • comparative functional genomics • Pathline • comparative genomics (synteny) • MizBee • gene expression + interaction network • Cerebral Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm

  2. General Design Studies • large-scale system monitoring • LiveRAC • web logs • SessionViewer • computational linguistics • Constellation Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm

  3. Dimensionality Reduction • visual dimensional analysis and reduction toolkit • DimStiller • GPU accelerated MDS • Glimmer • steerable MDS • MDSteer Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm

  4. User Studies • overview use • stretch and squish vs. pan/zoom navigation • separate vs. integrated views • impact of distortion on visual search, visual memory • 2D points vs. 3D landscapes Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm

  5. Graph/Tree Vis • general multilevel graphs • layout • TopoLayout • interaction • Grouse, GrouseFlocks, TugGraph • evolutionary tree comparison • TreeJuxtaposer • 3D hyperbolic graphs • H3 Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm

  6. Theory/Models • nested model for design and validation • papers process and pitfalls

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