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Reachability Query Over A Large Graph

北京大学计算机科学技术研究所 Institute of Computer Science and Technology of Peking University. Reachability Query Over A Large Graph. Instructor: Lei Zou. Reachability Query.

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Reachability Query Over A Large Graph

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  1. 北京大学计算机科学技术研究所 Institute of Computer Science and Technology of Peking University Reachability Query Over A Large Graph Instructor: Lei Zou

  2. Reachability Query • Problem Definition: Given a single large directed graph G and two vertices u1 and u2, recahability query verifies whether there exists an directed path from u1 and u2. 15 • ?Query(1,11) • Yes • ?Query(3,9) • No 14 11 13 10 12 6 7 8 9 3 4 5 1 2

  3. Applications • XML Data “//”: ancestor-descendant search • Biological Networks “Finding all genes whose expressions are directly or indirectly influenced by a given molecule” • Paper Citation Network “Given two papers A and B, we want to check whether A is directly or indirectly cited by B”.

  4. Naïve Methods 10,000 nodes and 20,000 edges

  5. Existing Solutions • Chain Cover 5 1 2 6 7 3 8 4

  6. Existing Solutions • Tree Cover 1 2 6 7 3 8 4 5

  7. Existing Solutions • 2-hop Labeling 1 Hops 2 6 7 3 8 4 5

  8. Preliminary •  A directed acyclic graph (commonly abbreviated to DAG), is a directed graph with no directed cycles. • Any directed graph G can be transformed into a DAG G’ by condensing each “strong connected component” into one node. • G and G’ have the same “reachability” information.

  9. Preliminary • In graph theory, a topological sort or topological ordering of a directed acyclic graph (DAG) is a linear ordering of its nodes in which each node comes before all nodes to which it has outbound edges. • Every DAG has one or more topological sorts.

  10. Topological Ordering E C B D G F A A G B D C E F

  11. Outline • Chain Cover Chain@TODS1990 • Tree Cover GRIPP @ SIGMOD 2007, Dual Labeling@ICDE2006 • Path-Tree Cover pathtree@SIGMOD 2008 • 2Hop-Labeling HOPI@EDBT2004, FAST2Hop@EDBT2008

  12. Outline • Chain Cover Chain@TODS1990 • Tree Cover GRIPP @ SIGMOD 2007, Dual Labeling@ICDE2006 • Path-Tree Cover pathtree@SIGMOD 2008 • 2Hop-Labeling HOPI@EDBT2004, FAST2Hop@EDBT2008

  13. Chain@TODS1990 (2, C1) E (1, C1) C (0, C1) (1, C0) (3, C0) B D G F (2, C0) 13 Chains: A  B  D  F G  C  E A (0, C0)

  14. Chain@TODS1990 (2, C1) Can A reach E ? E (1, C1) C (0, C1) (1, C0) (3, C0) B D G F (2, C0) A (0, C0)

  15. Chain Decomposition E C B D G F A A G B D C E F

  16. Chain Decomposition • A Simple Method: • 1. Firstly, a topological sort is performed over DAG. 2. Find v, the smallest vertex (in the ascending order of the topological sort) in the graph and add it to the path P. • Then find v’, such that v’ is the smallest vertex in the graph such that there is an edge from v to v’. Add v’ to the path P. • Iteratively, go to Step 3 until that no v’ can be found. • Remove all vertices in P from the DAG • Iteratively, go to Step 2 until no vertex left in DAG.

  17. Outline • Chain Cover Chain@TODS1990 • Tree Cover GRIPP @ SIGMOD 2007, Dual Labeling@ICDE2006 • Path-Tree Cover pathtree@SIGMOD 2008 • 2Hop-Labeling HOPI@EDBT2004, FAST2Hop@EDBT2008

  18. GRIPP @ SIGMOD 2007 • Pre- and Postorder Numbering For Trees Node labeling during depth-first traversal of G. R [ 0, 17 ] w reachable from v iff vpre < wpre < vpost [ 1, 16] A [ 2, 7] [ 8, 9] [ 10, 15] E reachable from A? Epre = 3 Apre = 1, Apost = 16 1 < 3 < 16  true B C D [ 3, 4] [ 5, 6] [ 11, 12] [ 13, 14] E F G H

  19. Non-Tree Edge General Idea In GRIPP Input: Given a graph, G = (V, E) Output:Create the GRIPP index table, IND(G) one instance for every node v in G – Node identifier – Preorder value – Postorder value – Instance type R Non-tree edge A B C D E F G H

  20. Index creation Depth-first traversal of G [0 21 ] R Non-tree instances 17 ] [16 [1 20 ] A [10 19 ] [8 9 ] [2 7 ] B C D [12 13 ] [5 6 ] [3 4 ] [11 14 ] [15 18 ] E F G H

  21. GRIPP Index Table, IND(G) Depth-first traversal of G [0 21 ] R 17 ] [16 [1 20 ] A [10 19 ] [8 9 ] [2 7 ] B C D [12 13 ] [5 6 ] [3 4 ] [11 14 ] [15 18 ] E F G H

  22. Order Tree, O(G) post R [0 21 ] R A D 20 H 17 ] A [16 G [1 20 ] A 15 B [10 19 ] [8 9 ] [2 7 ] 10 C B C D [12 13 ] B 5 F [5 6 ] [3 4 ] [11 14 ] E E F G H pre 5 10 15 20 [15 18 ]  Tree instances: Inner or leaf node  Non-tree instances: Always leaf node

  23. Reachable Instance Set (RIS) post R [0 21 ] R A D 20 H 17 ] [16 A [1 20 ] G A 15 B [10 19 ] [8 9 ] [2 7 ] 10 C B C D [12 13 ] B 5 F [5 6 ] [3 4 ] [11 14 ] E F E G H pre 5 10 15 20 [15 18 ] 23

  24. Query Processing Query : A  H ? post R [0 21 ] R A D 20 H 17 ] [16 A [1 20 ] G A 15 B [10 19 ] [8 9 ] [2 7 ] 10 C B C D [12 13 ] B 5 F [5 6 ] [3 4 ] [11 14 ] E F E G H pre 5 10 15 20 [15 18 ] Yes Yes 24

  25. Query Processing Query : D  C ? We must extend the search post R [0 21 ] R A D 20 H 17 ] [16 A [1 20 ] G A 15 B [10 19 ] [8 9 ] [2 7 ] 10 C B C D [12 13 ] B 5 F [5 6 ] [3 4 ] [11 14 ] E F E G H pre 5 10 15 20 [15 18 ] Yes No 25

  26. Query Processing post R [0 21 ] R A D 20 H 17 ] [16 A [1 20 ] G A 15 B [10 19 ] [8 9 ] [2 7 ] 10 C B C D [12 13 ] B 5 F [5 6 ] [3 4 ] [11 14 ] E F E G H pre 5 10 15 20 In worst case, we need to perform ( |E|-|V|) queries Yes

  27. Algorithm Step 1 : Retrieve RIS(D) If Stop Search; Return TRUE else proceed Step2. Step 2: Check every i ∈ RIS(D)  If i is tree instance – [G and H] – Continue else – [A and B] – i has no successors in O(G), but possibly in G – proceed to Step 3 Step 3: Obtain the tree instance of node i  Proceed to Step 1 C ∈ RIS(D) R A D 20 H A G 15 B 10 C B 5 F E pre 5 10 15 20 Repeat steps 1…3 until  an instance of node C is found  or no more hop nodes are available

  28. Pruning Rules Pruning hop nodes  Simple – Never retrieve reachable instance sets twice  Skip – Skip already searched areas  Stop – Certain nodes cannot have hop nodes in their reachable instance set – This property can be pre-computed

  29. Simple and Skip-Strategy • Keep list of used hop nodes, U • When examining a new hop node h four possible positions of h relative to u ∈ U h = u u ∈ RIS(h) h ∈ RIS(u) h sibling to u No No Yes Yes, but skip

  30. Stop Nodes Node s is a stop node iff  all non-tree instances in RIS(s) also have their corresponding tree instances in RIS(s) or are s R A D 20 H 1. Node A is a stop node  no hop node in RIS(A) can be used 2. Nodes B, C, E, F, and R are also stop Nodes 3. Nodes D, G, and H are no stop nodes A G 15 B 10 C B 5 F E pre 5 10 15 20

  31. Implementation Issues: GRIPP • 1. Introducing one virtual root node r. • 2. Connect r to the node with the highest degree. • 3. Traverse and Label the nodes. • 4. For the remaining part, repeat steps 2 – 3 until all vertices are covered.

  32. Dual Labeling @ICDE 2006 [0, 21 ] • Naïve Dual Labeling: • Tree Interval-Based Labeling • Link Table [1, 8] [9, 20] X 11  [1, 8] 16  [10, 15] [10, 15] [16, 19] [2, 7] Y [5, 6] [3, 4] [13, 14] [11, 12] [17, 18]

  33. Query Processing Over Naïve Dual Labeling [0, 21 ] Case 1: Query B  F ? 17 ∈ [9, 20] A [1, 8] [9, 20] X B Case 2: Query C  X ? [10, 15] [16, 19] [2, 7] G Y C 16  [10, 15] 11 ∈ [10, 15] 11  [1, 8] YES [5, 6] [3, 4] [13, 14] H I D E F [11, 12] [17, 18]

  34. Query Processing Over Naïve Dual Labeling Lemma 1. Assume two nodes u and v are labeled [a, b] and [c, d], respectively. There is a path from u to v iff c ∈[a, b] or the link table contains a series of m non-tree edges: i1 [j1,k1], … …, im  [jm, km] (1) such that i1 ∈ [a,b], c ∈[jm,km], and im’ ∈[jm’-1, km’-1]for all 1 < m’ ≤ m.

  35. Transitive Link Table • Size of Transitive Link is O(t), where t = |E(G)|-|V(G)| • Naïve Query Processing: Traversing and exploring the non-tree edges in an iterative fashion. • Transitive Link Table Given two links i1  [j1, k1] and i2  [j2, k2] in the link table, if i2 ∈[j1,k1], we add a new link i1  [j2,k2]. • Size of the transitive link table: O(t2).

  36. Transitive Link Table • An Example [0, 21 ] A 16  [10, 15] 11  [1, 8] 16  [1, 8] [1, 8] [9, 20] X B [10, 15] [16, 19] [2, 7] G Y C [5, 6] [3, 4] [13, 14] H I D E F [11, 12] [17, 18]

  37. Query Over Transitive Link Table • Assume two nodes u and v are labeled [a, b] and [c, d], respectively. There is a path from u to v iff 1) c ∈[a, b]; or 2) The transitive link table contains such link i [j, k], where i ∈[a, b] AND c ∈[j, k] k d c j a i b

  38. N(.,.) 15 Query: B  G ? N(9, 2) - N (9, 20) > 0  (B  G) TRUE 10 8 7 N(9,2) = 2 N(9,20) = 0 2 1 9 11 16 20

  39. Reducing Space Cost ■ ■ In each cell, all H(.,.) are the exactly same with each other. 15 10 ■ ■ 8 ■ ■ 7 2 1 ■ ■ 9 11 16 20

  40. Outline • Chain Cover Chain@TODS1990 • Tree Cover GRIPP @ SIGMOD 2007, Dual Labeling@ICDE2006 • Path-Tree Cover pathtree@SIGMOD 2008 • 2Hop-Labeling HOPI@EDBT2004, FAST2Hop@EDBT2008

  41. Path-Tree in a Nutshell 15 14 P4 11 13 10 12 P2 6 7 8 9 P4 P1 P3 3 4 5 P3 1 2 P2 P1

  42. Key Problems • How to construct a path-tree? • Algorithm • How can a path-tree help with reachability queries? • Labeling • Transitive Closure Compression • How does path-tree compare with the existing methods? • Optimality

  43. Constructing Path-Tree • Step 1: Path-Decomposition of DAG • Step 2: Minimal Equivalent Edge Set between any two paths • Step 3: Path-Graph Construction • Step 4: Path-Tree Cover Extraction

  44. Step 1: Path-Decomposition 15 (PID,SID) =(2, 5) 14 11 For any two nodes (u, v) in the same path, u  v if and only if (u.sid  v.sid) 13 10 12 6 7 8 9 P4 3 4 5 P3 1 2 P2 P1 Simple linear algorithm based on topological sort can achieve a path-decomposition

  45. Step 2: Minimal equivalent edge set The reachability between any two paths can be captured by a unique minimal set of edges 15 15 14 14 11 11 13 10 13 10 6 7 P1 P2 P1  P2 6 7 3 4 3 4 1 2 1 2 P2 P2 P1 P1 The edges in the minimal equivalent edge set do not cross (always parallel)!

  46. Step 2: Constructing Minimal Equivalent Edge Set (PiPj) • Ordering the vertices in Pi and Pj by decreasing order • Finding the first vertex v in P_j that P_i can reach • Finding the last vertex u in P_i that reach v • Removing all the edges cross (u,v) and • repeat 2-4 15 14 11 13 10 6 7 3 4 1 2 P2 P1 P1 P2

  47. Step 3: Path-Graph Construction Weight reflects the cost we have to pay for the transitive closure computation if we exclude this path-tree edge 15 14 P2 11 2 5 13 10 12 4 P4 P1 2 2 1 1 6 7 8 9 1 P4 P3 3 4 5 P3 Weighted Directed Path-Graph 1 2 P2 P1

  48. Step 4: Extracting Path-Tree Cover P2 P2 2 2 4 5 5 P4 P4 P1 P1 2 2 2 1 1 1 P3 P3 Weighted Directed Path-Graph Maximal Directed Spanning Tree Chu-Liu/Edmonds algorithm, O(m’+ k logk)

  49. Key Problems • How to construct a path-tree? • Algorithm • How can path-tree help with reachability queries? • Labeling • Transitive Closure Compression • How does path-tree compare with the existing methods? • Optimality

  50. 3-Tuple Labeling for Reachability 15 [1,3] P2 14 11 [1,4] P4 13 10 12 P1 [1,1] [2,2] 6 7 8 P3 9 P4 3 4 5 Interval labeling (2-tuple) High-level description about paths Pi  Pj ? P3 1 2 P2 P1 DFS labeling (1-tuple)

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