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Collaborative Development and Testing of Bioinformatics Tools – Team Update

On Wednesday, the Hello World Industries team convened to assign tasks for our ongoing bioinformatics project. Under the leadership of Project Leader Shaun Calvert, code developers Jack Davies and David Starns worked collaboratively via email to refine our Perl code and focus on testing procedures in production. Various testing stages included using Google Code for file uploads and testing HTML code on localhost, with the team striving for enhanced user experience through bug fixes and a clearer interface. Future directions include integrating multiple databases and developing additional tools for bioinformatics research.

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Collaborative Development and Testing of Bioinformatics Tools – Team Update

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Presentation Transcript

  1. Hello World Industries

  2. Team working • Wednesday the tasks were designated. • Shaun Calvert – Project Leader • Jack Davies – Code developer (DNA) • David Starns – Code developer (Protein) • Liaised via email • Google Code used to upload files

  3. Testing procedures-Production • Testing perl code and general logic in the Perl command line.

  4. Testing procedures-Production • Initial code tested in w3schools ‘try it yourself editor’ page. • Testing html code in ‘localhost’.

  5. Testing procedures • Testing html code in ‘localhost’.

  6. Testing procedures • Testing html code in ‘localhost’.

  7. Errors and More User friendly • Add a user guide/clearer home button on here. • Reformatting page/text to appear nicer and clearer. • Bug fixes Image from: http://mineblitz.com/?p=198

  8. Future directions • Integrate other databases • Swissprot/Uniprot(Ensembl) • European Nucleotide Archive • Blastp and Blastn searches • Tool for primer design • Usage of other protease enzymes • Making it even more user friendly

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