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Peach GBrowse: Interactive Visualization Tool for Peach Genome Annotations

Peach GBrowse is a customized instance of the GBrowse genome browser, designed specifically for visualizing and manipulating annotations of the peach genome. Developed by GMOD (Generic Model Organism Database), it provides an interactive web interface for searching by annotation ID, name, or comment. Users can customize track views, zoom in on specific regions, and upload their own annotation files. This tool allows researchers to effectively explore and analyze genomic data, facilitating advancements in peach genomics research.

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Peach GBrowse: Interactive Visualization Tool for Peach Genome Annotations

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  1. Peach GBrowse The generic Genome Browser (GBrowse) A combination database and interactive web page for manipulatingand displaying annotationson genomes Developed by GMOD (Generic Model Organism Database) Peach GBrowse : a customized GBrowse for the Peach genome

  2. Peach GBrowse Overview Description menus Search Bird’s eye view Details Tracks

  3. Peach GBrowse Search Search by annotation ID, name, or comment Scroll/zoom Regiondisplayed Hide Details (minus-sign) Scroll, zoom Dropdown list OpenDetails (plus-sign)

  4. Peach GBrowseSearch OpenDetails click

  5. Peach GBrowse Tracks remove track (cross-sign)

  6. Peach GBrowseTracks choose tracks you want to see

  7. Peach GBrowse Tracks click

  8. Peach GBrowseTracks Selecting regions with mouse

  9. Peach GBrowse Tracks click

  10. Peach GBrowse Configuring Tracks click Customize your track views

  11. Peach GbrowsePreferences click • “Image Width”

  12. Peach GBrowse Preferences click edit Highlights the specified region and feature

  13. Peach GBrowseReports Download sequences or track data Display settings click click

  14. Peach GBrowseReports

  15. Peach Gbrowse – Adding your annotations Upload or import your own annotation files

  16. Peach GBrowseTutorial References • http://www.openhelix.com/gbrowse • http://gmod.org/wiki/Gbrowse Acknowledgements • This tutorial was based on the Open Helix Gbrowse 1.6 tutorial which was modified for the peach genome sequence and annotations implemented in GBrowse 2.0

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