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GO as a community resource

GO as a community resource. GO Mine. AmiGO 2 and Solr. AmiGO 2: Background. Background: MySQL database has been at core of GO since 2000 Drives PAINT, AmiGO Problem MySQL/RDBMS no longer a good fit for many GO requirements (fast website, faceted browsing) Plan

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GO as a community resource

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  1. GO as a community resource

  2. GO Mine

  3. AmiGO 2 and Solr

  4. AmiGO 2: Background • Background: • MySQL database has been at core of GO since 2000 • Drives PAINT, AmiGO • Problem • MySQL/RDBMS no longer a good fit for many GO requirements (fast website, faceted browsing) • Plan • Migrate to Solr backend (Golr) • Rewrite AmiGO to use Golr • Provide fast faceted search • Keep pace with increased expressivity in GO • Share components with QuickGO and other software

  5. AmiGO 2: Results • Status: beta release • Loader code ported to use java and OWL API for pre-computing ontology operations • Frontend code rewritten to be lightweight and make increased use of JavaScript • Graphics from QuickGO • Faceted browsing • Leverages full expressivity of GO • Full evidence ontology • Annotation extensions • External ontologies

  6. AmiGO 2 screenshot

  7. AmiGO 2 plans • Reuse Golr backend in QuickGO • Open community development model • Generic model, easily customized • Already being adopted by other groups

  8. GO WebSite

  9. GO Galaxy

  10. Summary

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